MmuEX6099240 @ mm10
Exon Skipping
Gene
ENSMUSG00000026787 | Gad2
Description
glutamic acid decarboxylase 2 [Source:MGI Symbol;Acc:MGI:95634]
Coordinates
chr2:22629948-22650308:+
Coord C1 exon
chr2:22629948-22630060
Coord A exon
chr2:22634930-22635045
Coord C2 exon
chr2:22650229-22650308
Length
116 bp
Sequences
Splice sites
3' ss Seq
ACTGTTTTTGTGCCCTCTAGGTG
3' ss Score
11.86
5' ss Seq
CATGTATGT
5' ss Score
5.71
Exon sequences
Seq C1 exon
GTTCACCTATGAGATCGCCCCTGTATTTGTGCTGCTAGAATATGTTACACTAAAGAAAATGAGAGAAATCATTGGCTGGCCCGGGGGCTCTGGCGATGGAATCTTTTCTCCTG
Seq A exon
GTGGCGCCATCTCCAACATGTATGCCATGCTCATTGCCCGCTATAAGATGTTTCCAGAAGTCAAGGAGAAGGGGATGGCAGCAGTGCCCAGGCTCATCGCGTTCACATCAGAGCAT
Seq C2 exon
AGTCACTTTTCTCTCAAGAAGGGAGCTGCAGCCTTAGGGATTGGAACAGACAGTGTGATTCTGATTAAATGTGACGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026787-'8-8,'8-7,10-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0028214=Pyridoxal_deC=FE(10.2=100)
A:
PF0028214=Pyridoxal_deC=FE(10.2=100)
C2:
PF0028214=Pyridoxal_deC=FE(14.3=100)
Main Skipping Isoform:
ENSMUST00000028123fB10331
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCTATGAGATCGCCCCTG
R:
TCGTCACATTTAATCAGAATCACACT
Band lengths:
188-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types