DreEX0034282 @ danRer10
Exon Skipping
Gene
ENSDARG00000090183 | gapvd1
Description
GTPase activating protein and VPS9 domains 1 [Source:ZFIN;Acc:ZDB-GENE-040718-117]
Coordinates
chr8:34474919-34479014:-
Coord C1 exon
chr8:34478747-34479014
Coord A exon
chr8:34476397-34476972
Coord C2 exon
chr8:34474919-34475005
Length
576 bp
Sequences
Splice sites
3' ss Seq
TGCTGTCCTACTCTCATCAGGTG
3' ss Score
9.1
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
Exon sequences
Seq C1 exon
TGCCGAGGCCTCACCTGCAGAATGCTGCCAGCATGCCAAGTTTCTGGAGGACACACAGTTTGTGGATGGTTATAAAACACTGGGCTTTCAGGAGAGCATCTATGGAGAGTTCCTGAGCCGATTGAGGGAGAACCCGCGATTGGTGGCGTCCTGTCTGGTGGCAGGAGAGAGACTTAATAATGAGCACACACAGGGGGTCATACACACTGTCTTCACCACTCTCTATGGCAACTGCATCATGCAGGAGGATGAAAGCTACCTGCTGCAG
Seq A exon
GTGCTGCGTTATTTGGTAGAATTTGAGCTAAAGGAAAATGACAACCCTCGTCGGTTGTTACGGCGAGGCACGTGTGCCTTCAGCATCCTCTTCAAACTCTTCTCCGAAGGCCTGTATTCAGCTAAACTTTTCCTCACCGCTACTCTCCACGAGCCCATCATGCAGCTTCTGGTAGAGGACGAGGACCATCTAGAGACAGATCCAGCCAAACTGATAGAGCGCTTTACCCCAGCCCAGCAGGAGCGCCTGTTTGGGGAGAAAGGCACAGACGAGTACCGCAGAAAGGTTCAAGCAGCAGTGGAGGAAAATGAGGCCAAGCTGGTGGCTCTTGTAAACACCTTTATCGGCTACTTGAAGCAGAACACCTACTGCTTCCCACAGAGCCTGCGCTGGATCGTGTCTCAGATGTATAAGACGCTGGCACGAGTGGAGAGGTTGGAGGTTGGGGAGGTGAGGACGATGTGCACAGACTTGCTGCTCACCTGCTTCATCTGTCCAGCCATCGTCAACCCCGAACAGTACGGCATCATCTCAGATGCACCCATCAATGAGGTGGCACGCTTCAACCTCATGCAG
Seq C2 exon
GTGGGGCAGTTGTTGCAGCAGTTAGCAATGTCTGATGCAGATGATGGAGATCCTCGACGTAAAAGCAGTTTATTAAAGTTTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000090183-'4-5,'4-4,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0061614=RasGAP=PU(94.6=99.5)
C2:
PF0061614=RasGAP=PD(4.5=31.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTCACCTGCAGAATGC
R:
AACTTTAATAAACTGCTTTTACGTCG
Band lengths:
342-918
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]