GgaEX1026082 @ galGal3
Exon Skipping
Gene
ENSGALG00000000993 | GAPVD1
Description
NA
Coordinates
chr17:10326229-10328896:+
Coord C1 exon
chr17:10326229-10326413
Coord A exon
chr17:10326807-10327650
Coord C2 exon
chr17:10328810-10328896
Length
844 bp
Sequences
Splice sites
3' ss Seq
TTTCAATGTTTTTCTTTAAGTGC
3' ss Score
7.38
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
ATGGTGAAGCTGGATATACACACACTGGCTCATCACCTCAAGCAGGAACGACTGTATGTAAACTCAGAAAAGCAACTTATTCAGAGGCTGAATGCAGACGTATTGAAGACAGCTGAAAAGCTGTACCGCACAGCATGGATTTCCAAGCAGCAGCGGATTAACTTGGACAGACTGATCATCACAAG
Seq A exon
TGCGGAAGCTTCTCCTGCTGAATGCTGTCAGCATGCTAAAATCTTGGAGGATACGCAGTTTGTGGATGGACATAAGCAGTTGGGATTTCAGGAGACTGCTTATGGAGAGTTCCTGAACAGATTGAGAGAGAACCCTAGGCTTATCGCGTCCTGTCTGGTTGCCGGAGAGAAGCTCAACCAGGACAACACCCAGAGTGTCATTCACACAGTCTTTACCTCCATTTATGGCAACTGCATCATGCAGGAGGATGAGAGCTACCTCCTGCAGGTCCTTCGTTACTTGATTGAATTTGAACTTAAGGAAAGTGACAACCCTAGGCGGCTGTTGAGACGAGGCACTTGTGCGTTCAGCATCTTATTCAAACTTTTCTCTGAAGGACTTTTTTCTGCAAAACTCTTTCTTACTGCAACTTTACATGAGCCAATCATGCAGCTTCTGGTTGAAGACGAAGATCACCTGGAAACTGATCCAAACAAGTTAATTGAGAGATTCTCTCCAGTCCAACAGGAGAAATTGTTTGGAGAGAAAGGCACAGAAAAATTTAAGCAAAGAGTCCAAGAAATGGTTGACTCCAACGAGGCGAAGCTGGTGACCTTGGTGAACAAATTCATTGGCTATCTCAAACAAAATACATACTGTTTTCCACATAGCTTGCGATGGATCGTGTCACAAATGTACAAAACGCTCTCGTGTGTAGACAGGCTGGAGGTTGGGGAGGTCAGAGCAATGTGCACAGATCTCCTTCTAGCATGTTTCATCTGTCCTGCAATCGTTAATCCAGAACAGTATGGGATAATTTCTGATGCTCCTATAAACGAGGTGGCAAGATTTAATCTGATGCAG
Seq C2 exon
GTTGGGAGACTTCTGCAGCAGTTGGCAATGACAGGTTCTGAAGAGGGAGATCCACGTATGAAGAGCAACCTTGCTAAATTTGACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000993-'0-2,'0-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.069
Domain overlap (PFAM):
C1:
NO
A:
PF0061614=RasGAP=PU(94.6=67.7)
C2:
PF0061614=RasGAP=PD(4.5=31.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGAAGCTGGATATACACACAC
R:
AGGTTGCTCTTCATACGTGGA
Band lengths:
255-1099
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]