MmuEX1010889 @ mm10
Exon Skipping
Gene
ENSMUSG00000026867 | Gapvd1
Description
GTPase activating protein and VPS9 domains 1 [Source:MGI Symbol;Acc:MGI:1913941]
Coordinates
chr2:34727216-34730680:-
Coord C1 exon
chr2:34730463-34730680
Coord A exon
chr2:34728331-34729174
Coord C2 exon
chr2:34727216-34727302
Length
844 bp
Sequences
Splice sites
3' ss Seq
TGTGTGCTAATATTTTCCAGTGC
3' ss Score
7.7
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
TGATCAACTTTTGTACCTTTTCCGAATTCAAAGATGGTGAAGCTAGATATTCACACATTGGCCCACCACCTCAAGCAGGAACGCTTATATGTGAGCTCTGAGAAACAGCTCATTCAGAGGCTAAATGCCGATGTACTGAAGACAGCTGAAAAGCTGTATCGAACAGCGTGGATTGCAAAGCAACAGAGGATTAATTTGGATCGTCTTATTATAACCAG
Seq A exon
TGCTGAAGCTTCCCCTGCTGAGTGTTGCCAGCATGCCAAGATTTTGGAAGATACACAGTTTGTTGATGGATATAAGCAACTGGGATTTCAGGAAACAGCTTATGGAGAATTCCTGAGTCGGTTAAGAGAAAATCCACGACTTATTGCCTCCTCTTTGGTTGCTGGAGAAAAACTCAATCAGGAGAACACACAAAGTGTTATCTACACTGTTTTTACCTCCTTGTATGGCAACTGTATTATGCAAGAAGATGAAAGCTACCTCCTTCAGGTTTTACGATACTTGATTGAATTTGAACTTAAAGAAAGTGACAACCCCAGGCGCCTTTTGAGGAGAGGAACTTGTGCCTTCAGCATCTTATTTAAACTTTTTTCTGAAGGACTGTTTTCTGCCAAACTTTTCCTTACGGCTACTTTGCATGAGCCAATCATGCAGCTCCTCGTAGAGGATGAAGACCACCTGGAAACAGATCCAAACAAGCTGATAGAGAGATTCTCTCCAGCTCAGCAAGAAAAACTCTTTGGAGAGAAAGGCTCAGATAGATTTAGGCAAAAGGTTCAAGAAATGGTAGATTCCAATGAGGCTAAACTAGTGGCTTTGGTGAACAAATTTATTGGTTATCTTAAACAGAATACATACTGCTTTCCACATAGTTTGAGGTGGATTGTGTCACAGATGTACAAAACTCTTTCTTGTGTAGACAGATTGGAGGTTGGGGAAGTCAGAGCAATGTGTACCGATCTTCTGCTGGCTTGCTTCATTTGTCCTGCAGTTGTCAATCCAGAGCAGTATGGGATAATATCTGATGCTCCTATTAATGAGGTGGCAAGATTTAACCTGATGCAG
Seq C2 exon
GTTGGCCGCCTTTTGCAGCAGCTAGCAATGACTGGCACTGAAGAAGGAGATCCCCGGACCAAAAATAGCCTTGGAAAATTTGACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026867-'17-21,'17-18,21-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.240
Domain overlap (PFAM):
C1:
NO
A:
PF0061614=RasGAP=PU(94.6=67.7)
C2:
PF0061614=RasGAP=PD(4.5=31.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCAACTTTTGTACCTTTTCCGA
R:
GTCAAATTTTCCAAGGCTATTTTTGG
Band lengths:
302-1146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types