GgaEX1026082 @ galGal4
Exon Skipping
Gene
ENSGALG00000000993 | GAPVD1
Description
GTPase activating protein and VPS9 domains 1 [Source:HGNC Symbol;Acc:HGNC:23375]
Coordinates
chr17:9604234-9606901:+
Coord C1 exon
chr17:9604234-9604418
Coord A exon
chr17:9604812-9605655
Coord C2 exon
chr17:9606815-9606901
Length
844 bp
Sequences
Splice sites
3' ss Seq
TTTCAATGTTTTTCTTTAAGTGC
3' ss Score
7.38
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
ATGGTGAAGCTGGATATACACACACTGGCTCATCACCTCAAGCAGGAACGACTGTATGTAAACTCAGAAAAGCAACTTATTCAGAGGCTGAATGCAGACGTATTGAAGACAGCTGAAAAGCTGTACCGCACAGCATGGATTTCCAAGCAGCAGCGGATTAACTTGGACAGACTGATCATCACAAG
Seq A exon
TGCGGAAGCTTCTCCTGCTGAATGCTGTCAGCATGCTAAAATCTTGGAGGATACGCAGTTTGTGGATGGACATAAGCAGTTGGGATTTCAGGAGACTGCTTATGGAGAGTTCCTGAACAGATTGAGAGAGAACCCTAGGCTTATCGCGTCCTGTCTGGTTGCCGGAGAGAAGCTCAACCAGGACAACACCCAGAGTGTCATTCACACAGTCTTTACCTCCATTTATGGCAACTGCATCATGCAGGAGGATGAGAGCTACCTCCTGCAGGTCCTTCGTTACTTGATTGAATTTGAACTTAAGGAAAGTGACAACCCTAGGCGGCTGTTGAGACGAGGCACTTGTGCGTTCAGCATCTTATTCAAACTTTTCTCTGAAGGACTTTTTTCTGCAAAACTCTTTCTTACTGCAACTTTACATGAGCCAATCATGCAGCTTCTGGTTGAAGACGAAGATCACCTGGAAACTGATCCAAACAAGTTAATTGAGAGATTCTCTCCAGTCCAACAGGAGAAATTGTTTGGAGAGAAAGGCACAGAAAAATTTAAGCAAAGAGTCCAAGAAATGGTTGACTCCAACGAGGCGAAGCTGGTGACCTTGGTGAACAAATTCATTGGCTATCTCAAACAAAATACATACTGTTTTCCACATAGCTTGCGATGGATCGTGTCACAAATGTACAAAACGCTCTCGTGTGTAGACAGGCTGGAGGTTGGGGAGGTCAGAGCAATGTGCACAGATCTCCTTCTAGCATGTTTCATCTGTCCTGCAATCGTTAATCCAGAACAGTATGGGATAATTTCTGATGCTCCTATAAACGAGGTGGCAAGATTTAATCTGATGCAG
Seq C2 exon
GTTGGGAGACTTCTGCAGCAGTTGGCAATGACAGGTTCTGAAGAGGGAGATCCACGTATGAAGAGCAACCTTGCTAAATTTGACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000993-'0-3,'0-1,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.069
Domain overlap (PFAM):
C1:
NO
A:
PF0061614=RasGAP=PU(94.6=67.7)
C2:
PF0061614=RasGAP=PD(4.5=31.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGAAGCTGGATATACACACAC
R:
AGGTTGCTCTTCATACGTGGA
Band lengths:
255-1099
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]