RnoEX0037738 @ rn6
Exon Skipping
Gene
ENSRNOG00000017925 | Gapvd1
Description
GTPase activating protein and VPS9 domains 1 [Source:RGD Symbol;Acc:1307479]
Coordinates
chr3:13798032-13803788:-
Coord C1 exon
chr3:13803571-13803788
Coord A exon
chr3:13801649-13802492
Coord C2 exon
chr3:13798032-13798118
Length
844 bp
Sequences
Splice sites
3' ss Seq
TATGTGCTAACATTTTCCAGCGC
3' ss Score
7.02
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
TGATCAACCTTTGTACCTTTTCCGAATTCAAAGATGGTGAAGCTAGATATTCACACATTGGCCCACCACCTCAAGCAGGAGCGCTTATATGTGAGCTCTGAGAAACAGCTCATTCAGAGGCTAAATGCAGATGTGCTGAAGACAGCCGAGAAGCTGTATCGGACAGCGTGGATTGCAAAGCAGCAGAGGATTAATTTGGATCGTCTCATTATAACCAG
Seq A exon
CGCTGAAGCTTCCCCTGCTGAGTGTTGCCAGCATGCTAAGATTTTGGAAGACACACAGTTTGTTGATGGATATAAGCAACTGGGATTTCAGGAAACAGCCTATGGAGAATTCCTGAGTCGGTTAAGAGAGAATCCGCGTCTTATTGCCTCCTCTTTGGTTGCTGGAGAAAAACTCAATCAGGAGAACACACAAAGTGTTATCTACACTGTTTTTACCTCCTTGTATGGCAACTGTATTATGCAAGAAGATGAAAGCTACCTCCTTCAGGTTTTACGATACTTGATTGAATTCGAACTTAAAGAAAGTGACAACCCCAGGCGCCTTTTGAGGAGAGGAACCTGTGCCTTCAGCATCTTATTTAAACTTTTTTCTGAAGGACTGTTTTCTGCCAAACTTTTCCTTACGGCTACTTTACATGAGCCAATCATGCAGCTCCTTGTAGAAGATGAGGACCACCTGGAGACAGATCCAAACAAGCTAATCGAGAGGTTCTCTCCAGCCCAGCAGGAAAAACTCTTTGGAGAGAAAGGCTCAGATAGATTTAGGCAAAAGGTTCAAGAAATGGTAGATTCCAATGAGGCTAAACTAGTGGCTTTGGTGAACAAATTTATTGGTTACCTTAAGCAAAATACGTACTGCTTTCCACATAGTTTGAGGTGGATTGTATCACAGATGTACAAAACTCTTTCTTGTGTAGACAGATTGGAGGTTGGGGAGGTCAGAGCAATGTGTACGGATCTTCTGTTGGCTTGCTTCATTTGTCCCGCAGTTGTCAATCCAGAACAGTATGGAATAATATCTGATGCTCCTATTAATGAGGTGGCAAGATTTAACCTGATGCAG
Seq C2 exon
GTTGGCCGCCTTTTGCAGCAGTTAGCAATGACTGGCACTGAGGAAGGAGATCCCCGGACCAAAAATAGCCTTGGGAAATTTGACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017925-'8-5,'8-3,9-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.241
Domain overlap (PFAM):
C1:
NO
A:
PF0061614=RasGAP=PU(94.6=67.7)
C2:
PF0061614=RasGAP=PD(4.5=31.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCAACCTTTGTACCTTTTCCGA
R:
GTCAAATTTCCCAAGGCTATTTTTGG
Band lengths:
302-1146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]