BtaEX6046170 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011544 | GAPVD1
Description
Bos taurus GTPase activating protein and VPS9 domains 1 (GAPVD1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102520]
Coordinates
chr11:96168769-96172896:+
Coord C1 exon
chr11:96168769-96168986
Coord A exon
chr11:96170237-96171080
Coord C2 exon
chr11:96172810-96172896
Length
844 bp
Sequences
Splice sites
3' ss Seq
GTTTGCTCTTTTTTTTTTAGTGC
3' ss Score
10.23
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
TGATCAGCCTTTGTACCTTCTCCACGTTTGAAGATGGTGAAGCTAGATATTCATACTCTGGCCCATCACCTCAAGCAGGAACGCTTATACGTGAACTCTGAGAAACAGCTCATTCAGAGGCTTAATGCAGATGTACTTAAGACAGCCGAAAAGTTGTATCGTACAGCATGGATTGCTAAGCAGCAGAGAATTAATTTGGATCGGCTTATCATCACCAG
Seq A exon
TGCTGAAGCTTCCCCTGCTGAATGTTGCCAACATGCTAAGATTTTGGAAGACACACAGTTTGTTGATGGGTATAAGCAACTGGGATTTCAGGAGACTGCTTATGGAGAATTCTTGAGTCGACTAAGGGAAAATCCTCGTCTTATTGCCTCCTCCTTGGTTGCTGGAGAGAAACTTAATCAGGAGAACACACAGAGTGTCATTTACACAGTTTTTACCTCTCTCTATGGCAACTGCATTATGCAAGAAGATGAAAGCTACCTCCTTCAGGTGTTGAGATACTTGATTGAATTTGAACTTAAAGAAAGTGACAACCCCAGACGACTTTTGAGGAGAGGAACCTGTGCCTTCAGCATCTTATTTAAACTTTTTTCTGAAGGACTGTTTTCTGCCAAACTTTTCCTCACAGCTACTTTACATGAGCCGATCATGCAACTGCTTGTTGAAGACGAAGATCACCTGGAGACAGACCCAAACAAGCTGATTGAAAGGTTCTCCCCAGCTCAACAGGAAAAACTCTTTGGAGAGAAAGGCTCAGACAGGTTTAGGCAGAAGGTTCAAGAGATGGTGGATTCCAATGAGGCCAAACTTGTGGCCTTGGTGAACAAATTTATTGGTTATCTCAAACAGAACACTTACTGCTTCCCACATAGTCTGAGGTGGATTGTGTCACAGATGTACAAAACTCTCTCCTGTGTAGACAGACTGGAAGTTGGGGAGGTCAGGGCCATGTGCACTGACCTCCTGTTGGCCTGCTTCATTTGTCCTGCAGTCGTCAATCCAGAACAGTATGGAATAATCTCCGACGCTCCCATTAATGAGGTGGCGAGATTTAACCTGATGCAG
Seq C2 exon
GTTGGCCGCCTTTTGCAGCAATTAGCAATGACTGGCTCTGAAGAGGGAGATCCCCGGACAAAGAGCAGCCTTGGAAAATTTGACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011544-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.138
Domain overlap (PFAM):
C1:
NO
A:
PF0061614=RasGAP=PU(94.6=67.7)
C2:
PF0061614=RasGAP=PD(4.5=31.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCAGCCTTTGTACCTTCTCCA
R:
TGTCAAATTTTCCAAGGCTGCT
Band lengths:
302-1146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]