DreEX6050769 @ danRer10
Exon Skipping
Gene
ENSDARG00000090183 | gapvd1
Description
GTPase activating protein and VPS9 domains 1 [Source:ZFIN;Acc:ZDB-GENE-040718-117]
Coordinates
chr8:34476397-34484778:-
Coord C1 exon
chr8:34484573-34484778
Coord A exon
chr8:34478747-34479014
Coord C2 exon
chr8:34476397-34476972
Length
268 bp
Sequences
Splice sites
3' ss Seq
TATGTCTATTTTCTTTCCAGTGC
3' ss Score
9.75
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTGCGTCGGCTGAGCTGAACGATGGTGAAGCCAGACATTCACACTCTGGCCCACCACCTGAAGCAGGAACGTCTCTATGTGGCATCAGAGAAGCAGCTTATCCAGCGGCTCAACAACGAGGTGCTAAAGACAGCAGAAAGGCTCTACCGCGCAGCCTGGATCGCCAAACAACAGAGGATCAACCTCGACCGCCTCATTCTCACTAG
Seq A exon
TGCCGAGGCCTCACCTGCAGAATGCTGCCAGCATGCCAAGTTTCTGGAGGACACACAGTTTGTGGATGGTTATAAAACACTGGGCTTTCAGGAGAGCATCTATGGAGAGTTCCTGAGCCGATTGAGGGAGAACCCGCGATTGGTGGCGTCCTGTCTGGTGGCAGGAGAGAGACTTAATAATGAGCACACACAGGGGGTCATACACACTGTCTTCACCACTCTCTATGGCAACTGCATCATGCAGGAGGATGAAAGCTACCTGCTGCAG
Seq C2 exon
GTGCTGCGTTATTTGGTAGAATTTGAGCTAAAGGAAAATGACAACCCTCGTCGGTTGTTACGGCGAGGCACGTGTGCCTTCAGCATCCTCTTCAAACTCTTCTCCGAAGGCCTGTATTCAGCTAAACTTTTCCTCACCGCTACTCTCCACGAGCCCATCATGCAGCTTCTGGTAGAGGACGAGGACCATCTAGAGACAGATCCAGCCAAACTGATAGAGCGCTTTACCCCAGCCCAGCAGGAGCGCCTGTTTGGGGAGAAAGGCACAGACGAGTACCGCAGAAAGGTTCAAGCAGCAGTGGAGGAAAATGAGGCCAAGCTGGTGGCTCTTGTAAACACCTTTATCGGCTACTTGAAGCAGAACACCTACTGCTTCCCACAGAGCCTGCGCTGGATCGTGTCTCAGATGTATAAGACGCTGGCACGAGTGGAGAGGTTGGAGGTTGGGGAGGTGAGGACGATGTGCACAGACTTGCTGCTCACCTGCTTCATCTGTCCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000090183-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0061614=RasGAP=PU(94.6=99.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACATTCACACTCTGGCCC
R:
GCTGAATACAGGCCTTCGGAG
Band lengths:
297-565
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]