DreEX0034462 @ danRer10
Exon Skipping
Gene
ENSDARG00000068503 | gbgt1l4
Description
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1, like 4 [Source:ZFIN;Acc:ZDB-GENE-031204-4]
Coordinates
chr5:23284792-23289102:-
Coord C1 exon
chr5:23289073-23289102
Coord A exon
chr5:23288807-23288944
Coord C2 exon
chr5:23284792-23285996
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTATTTATTTTTTTAAACAGACC
3' ss Score
9.45
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GCTTTCATTCAATCAGCCCAGTGTAGTGGG
Seq A exon
ACCTGATGGCAAAATTGTACCTGTTACACCATGGTTAGCCCCAATTGTTTGGGAAGGAACTTTTGATCCCACATTGATTGATTCAGTCTACAAACAACAAAACGTCACTATAGCGACCACAGTCTTCGCTCTTGGAAA
Seq C2 exon
ATATACAGTGTTTCTCAAAGAATTCCTGGAGTCTGCAGAGCAGAATTATTTTGTTGGATTTCATGTGCACTATTATATCTTCACCGATCATCCAGAAGAGGTTCCTGATGTGAAACTGGGTGAAGGACATCAGTTGACGGTGATGACAGTTGATAGTTCTAACAGATGGCAGGAGATGACATTGCGGAGAATGGAGAGGCTGGAGAAACTAATTGAGAGTCGATTGGTGAAGGAAGCTGACTATGTTTTCAGCCTTGACGTTGATACAAAGTTCTACGCCCGCTGGGGTGCAGAGACTTTGGGTCGTCTTGTAGGTGTGCTTCATCCTGGTTACTATCAAACACCACGTGAGCAATTCCCATATGAGCGAAGGCCTGAGTCTCAAGCGTTTATCCCTTATTCTGATGGTGATTATTATTATGGTGGAGCTGTGCTTGGTGGTGCAGTGAAAGATGTATATGAGGTTGCTAAGACCTGCAGAGAGCAGCTGGACATTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068503_MULTIEX1-4/4=3-C2
Average complexity
S
Mappability confidence:
80%=80=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.009
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=FE(3.2=100)
A:
PF034148=Glyco_transf_6=FE(14.8=100)
C2:
PF034148=Glyco_transf_6=PD(73.0=98.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAATCAGCCCAGTGTAGTGG
R:
TCCTTCACCAATCGACTCTCA
Band lengths:
256-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]