DreEX0037763 @ danRer10
Exon Skipping
Gene
ENSDARG00000016936 | hmcn1
Description
hemicentin 1 [Source:ZFIN;Acc:ZDB-GENE-041014-322]
Coordinates
chr20:34283960-34285105:-
Coord C1 exon
chr20:34284903-34285105
Coord A exon
chr20:34284611-34284692
Coord C2 exon
chr20:34283960-34284091
Length
82 bp
Sequences
Splice sites
3' ss Seq
AAATTCTTTCTGTCTGTCAGGTA
3' ss Score
8.8
5' ss Seq
ATGGTGAAA
5' ss Score
0.56
Exon sequences
Seq C1 exon
TGCCTCCCAGTATCAGACACAACAGTGGGGATCTTCCGGTGGTGTTAAATGTTCAGGTGGGCAAATCTGTTATGCTGGAGTGTGAATCTAATGCAGTGCCTCCTCCTGTCATCACCTGGTACAAAAATGGACGGCCTATCGCTGAGACTGCCAACTTGCGCATATTGGCGGATGGACAAATGCTGCAACTGAAGGAAACAGAG
Seq A exon
GTATCAGATACAGGCCAGTATGTCTGTAAGGCCACAAATGTTGCAGGTCAAGTGGACAAGAACTTCCATCTCAACATACATG
Seq C2 exon
TTCCCCCCAGGCTGGACGGCCCAGCAGAAGAACGTGTTGTCGAAACCATTAGTAATCCTGTCACCTTCGCCTGCGATGCTACCGGGATCCCTCCTCCCTCCCTCACCTGGTTGAAGAATGGCAGAGTAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016936_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.111
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(67.9=83.8)
A:
PF0767911=I-set=PD(29.8=89.3)
C2:
PF0767911=I-set=PU(45.6=91.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGCTGAGACTGCCAACTTG
R:
TCTTCAACCAGGTGAGGGAGG
Band lengths:
183-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]