MmuEX0023006 @ mm9
Exon Skipping
Gene
ENSMUSG00000066842 | Hmcn1
Description
hemicentin 1 [Source:MGI Symbol;Acc:MGI:2685047]
Coordinates
chr1:152503584-152504403:-
Coord C1 exon
chr1:152504201-152504403
Coord A exon
chr1:152503823-152503904
Coord C2 exon
chr1:152503584-152503715
Length
82 bp
Sequences
Splice sites
3' ss Seq
ATAGTATCTTTTTCTTTTAGGTG
3' ss Score
9.69
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
TGCCCCCAAGCATCAAGGATCACGGCAGCCAATCTCTTTCTATAGTGAATGTAAGAGAGGGGACCTCAGTGTCTTTGGAATGTGAGTCAAATGCTGTGCCTCCTCCAGTCATCACCTGGTCTAAGAATGGGCGGATGATACCAGATTCTACCAACGTGGAGATTTTAACTGGTGGACAAACACTACACATCAGACGAGCCGAG
Seq A exon
GTGTCTGACACAGGCCAGTATGTATGTAGAGCTATAAATGTAGCAGGACGAGATGATAAAAATTTCCACCTCAATGTATATG
Seq C2 exon
TGCCTCCTACTATTGAAGGGCCGGAAACAGAAGTCATTGTGGAGACAATCAGCAATCCAGTGACATTGACTTGTGATGCCACTGGGATCCCGCCTCCCACCATAACATGGTTAAAGAACCACAAGCCTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066842_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.265 A=0.107 C2=0.244
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(69.0=88.2)
A:
PF0767911=I-set=PD(28.7=89.3)
C2:
PF0767911=I-set=PU(46.2=93.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTGGTCTAAGAATGGGCG
R:
GGATCCCAGTGGCATCACAAG
Band lengths:
181-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: