RnoEX6044633 @ rn6
Exon Skipping
Gene
ENSRNOG00000028627 | Hmcn1
Description
hemicentin 1 [Source:RGD Symbol;Acc:1564772]
Coordinates
chr13:68006068-68006886:-
Coord C1 exon
chr13:68006684-68006886
Coord A exon
chr13:68006305-68006386
Coord C2 exon
chr13:68006068-68006199
Length
82 bp
Sequences
Splice sites
3' ss Seq
ATAGTATCTTTTTCTTTTAGGTG
3' ss Score
9.69
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
TACCCCCAAGCATTAAGGATCACGGCAGCGAGTCTCTGTCTATAGTTAATGTAAGAGAGGGGACCTCGGTGTCATTGGAATGCGAGTCAAATGCTGTGCCCCCGCCAGTCATCACCTGGTCTAAGAATGGGCGGATGATACCGGATTCTAGCAACGTGGCGATTTTAACTGGTGGACAAATGCTACACATCAGGCGAGCCGAG
Seq A exon
GTGGCTGACACAGGCCAGTATGTATGTAGAGCTATAAATGTAGCAGGACGAGATGATAAAAATTTCCACCTCAATGTATATG
Seq C2 exon
TGCCCCCCACCATTGAAGGGCCTGAAACAGAAGTCATTGTGGAGACAATGAGCAATCCGGTGACATTGACTTGCGATGCCACTGGGATCCCTCCTCCCACCATAACATGGTTAAAGAACCACAAGCCCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028627-'73-74,'73-73,74-74=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.176 A=0.107 C2=0.378
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(68.6=86.8)
A:
PF0767911=I-set=PD(29.1=89.3)
C2:
PF0767911=I-set=PU(46.2=93.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCGGTGTCATTGGAATGC
R:
TTTCAGGCCCTTCAATGGTGG
Band lengths:
168-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]