GgaEX0007090 @ galGal3
Exon Skipping
Gene
ENSGALG00000005141 | HMCN1
Description
NA
Coordinates
chr8_random:333195-333983:+
Coord C1 exon
chr8_random:333195-333397
Coord A exon
chr8_random:333636-333717
Coord C2 exon
chr8_random:333852-333983
Length
82 bp
Sequences
Splice sites
3' ss Seq
TTTAATTATTTTTATTCTAGGTT
3' ss Score
9.42
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
TCCCCCCAGGCATCAAAGACCATAGTGGAACCTCAGTGACAGTGTTCAACGTGAGAGTTGGCACCCCAGTGATGTTAGAGTGTAAAGCCAGTGCTATCCCACCACCGGTCATCACCTGGTACAAGAACAGGCGTATGATTTCAGAGTCTGCAAATGTGGAGATCTTAGCAGATGGGCAAACATTACAAATCAAGGGTGCTGAG
Seq A exon
GTTTCTGACACTGGCCAGTATGTTTGCAAAGCCATAAATATTGCAGGGCGAGATGATAAAAATTTCCATCTTAACGTTTATG
Seq C2 exon
TGCCACCAAATATAGAAGGCCCTGAAGAAGAGTTGGTCATAGAAACAATCAGTAATCCTGTTGCCTTCATTTGTGATGCTACTGGAATTCCTCCACCAACACTGGTCTGGCTAAAGAATGGAAAACCACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005141-'71-87,'71-86,72-87
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(68.2=85.3)
A:
PF0767911=I-set=PD(29.4=89.3)
C2:
PF0767911=I-set=PU(46.2=93.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGGTCATCACCTGGTACAA
R:
GCATCACAAATGAAGGCAACAGG
Band lengths:
179-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]