DreEX0037782 @ danRer10
Exon Skipping
Gene
ENSDARG00000079327 | hmcn2
Description
hemicentin 2 [Source:ZFIN;Acc:ZDB-GENE-030131-9765]
Coordinates
chr8:32746751-32749579:+
Coord C1 exon
chr8:32746751-32746903
Coord A exon
chr8:32748096-32748233
Coord C2 exon
chr8:32749339-32749579
Length
138 bp
Sequences
Splice sites
3' ss Seq
TATTTCTACCTCCTTTACAGGTC
3' ss Score
10.44
5' ss Seq
CAGGTTACA
5' ss Score
-1.25
Exon sequences
Seq C1 exon
GAGAGTCTCCACGGCGTGCACGGGGCAGTCTGATAGGCATGGTCAATGAGAAGGAGTTTGGGGTGGCATATCTAGAAGCCAATATCACAGAAAATGATTTGGAGGGCACCAGCACCCTGGAGGCCCATGTTGAAAACATTCCTCCAAGTGTTG
Seq A exon
GTCCTTTGTTGCGAGTGCTTGTGTCTGTATTTGCCCCGGTATACTGGACAACAGTGTATCAAACACAGGAAACCCAGAATGGCTTCTCCATCACTGAAGGGCAGTTCAGACAGGAATCTCAGCTAGAGTTTGAAACAG
Seq C2 exon
GAGTTTGACGAGTCGTATGTGCAGACAGGCTCTGGGCAGCTTTATTCCTGGTCCACACAGAATCACATTCGGGACGGGGCTCCTCTTACCCTGCGCTGCAATCATACTATGGTTTTTGAGGGTCCAGAGAGCCGCCAGGGGCCCCTGCTTCAGCTTCTCAGACTGACAGGAATAAGTGGCACCTACAGCCTTTACACTCTCAGCCTAGACTTCAAGATGACAGCTTCCTTACTCATACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079327_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.147 A=0.085 C2=0.000
Domain overlap (PFAM):
C1:
PF074747=G2F=PU(27.4=98.1)
A:
PF074747=G2F=FE(24.7=100)
C2:
PF074747=G2F=PD(25.3=58.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGAGGCCCATGTTGAAAA
R:
GGCTGAGAGTGTAAAGGCTGT
Band lengths:
243-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]