GgaEX1001194 @ galGal4
Exon Skipping
Description
NA
Coordinates
JH375182.1:362078-363155:+
Coord C1 exon
JH375182.1:362078-362227
Coord A exon
JH375182.1:362571-362708
Coord C2 exon
JH375182.1:363034-363155
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTACACTGGATTTCTTTCAGGTC
3' ss Score
9.94
5' ss Seq
CTGGTTGTT
5' ss Score
-3.89
Exon sequences
Seq C1 exon
GTGGGCCTTCACGTGCCCTAGGCAGCATCATTGGAAACATCAACGATATTGAGTTTGGAATTGCTTCCCTGAATGCCACAGTAACAGACAGCCCAAACTCTGAATCTAGAGTAATACATGCAAAGATTACAAGCATCCCTCGGAGCCTTG
Seq A exon
GTCCAGCGCTGAGAAAGCTTGTTTCTATTCTGAGCCCAGTCTATTGGACAACTGCAAAAGAAGTTGGAGAAGCAATGAATGGGTTTACGCTCACTGACGCGATCTTCAAGAGAGAAACCCAAGTGGAATTTGCAACTG
Seq C2 exon
GAGAGGTTCTGCGAATGACTCACATTGCCCGGGGGTTGGATTCTGATGGAGCCTTACTGCTGGATGTTGTTGTGAATGGCCATGTTCTTCAGCTGCAGCCACTAGCTAATGTTAACATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005141_MULTIEX4-8/10=7-9
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF074747=G2F=FE(26.6=100)
A:
PF074747=G2F=FE(24.5=100)
C2:
PF074747=G2F=FE(21.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTTCACGTGCCCTAGG
R:
TAGTGGCTGCAGCTGAAGAAC
Band lengths:
251-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]