DreEX0039196 @ danRer10
Exon Skipping
Gene
ENSDARG00000058660 | ilf3a
Description
interleukin enhancer binding factor 3a [Source:ZFIN;Acc:ZDB-GENE-030131-3151]
Coordinates
chr6:8143630-8145133:-
Coord C1 exon
chr6:8144986-8145133
Coord A exon
chr6:8144069-8144160
Coord C2 exon
chr6:8143630-8143725
Length
92 bp
Sequences
Splice sites
3' ss Seq
CTTACTCCATTCGTCACTAGAAC
3' ss Score
6.55
5' ss Seq
CAGGTTTGC
5' ss Score
4.86
Exon sequences
Seq C1 exon
GATGTGACTGAGGAGAAATACGTCATCACTCCATCGATCCAGGAAGCTTCTGTTATTGTTACAAGCACGAAGGAACCCCTTTTGAAACTCCGCATCCATCTGACCTCACCTGTGGTCAGGGAGCAGGTTGAAAAAGAGGCATCTGGAG
Seq A exon
AACCGTGCGCGGAAAGCTCTCCGCAGGACGCTCTGGACAGGCAGAAATGCCTGGCTTCTCTGGCGTCTCTCCGCCAGGCCAAGTGGTTCCAG
Seq C2 exon
GCTAAAGTGTCCGGGCTTGAGTCGTGTGTCATTGTGATTCGGATCTTGCGGGACTTGTGTTCCCGTGTTTCAACATGGGCACCGCTCAAAGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058660_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.120 A=0.194 C2=0.000
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(19.7=100)
A:
PF075289=DZF=FE(12.0=100)
C2:
PF075289=DZF=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCATCGATCCAGGAAGCT
R:
CCCGCAAGATCCGAATCACAA
Band lengths:
173-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]