DreINT0081262 @ danRer10
Intron Retention
Gene
ENSDARG00000058660 | ilf3a
Description
interleukin enhancer binding factor 3a [Source:ZFIN;Acc:ZDB-GENE-030131-3151]
Coordinates
chr6:8144069-8145133:-
Coord C1 exon
chr6:8144986-8145133
Coord A exon
chr6:8144161-8144985
Coord C2 exon
chr6:8144069-8144160
Length
825 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGA
5' ss Score
8.55
3' ss Seq
CTTACTCCATTCGTCACTAGAAC
3' ss Score
6.55
Exon sequences
Seq C1 exon
GATGTGACTGAGGAGAAATACGTCATCACTCCATCGATCCAGGAAGCTTCTGTTATTGTTACAAGCACGAAGGAACCCCTTTTGAAACTCCGCATCCATCTGACCTCACCTGTGGTCAGGGAGCAGGTTGAAAAAGAGGCATCTGGAG
Seq A exon
GTATGATCTCACTTTTTGTCAATTTTGGACCAGAAAGACCTTCAGCGCCTTCAGAGGAGGGAAAATAGTAGTCCTGCAGTACATTCCTGCTCCACCAAATTGTTTAATGTTGAATGAAATGTGTTTTTATTTATATAAACGTATATACTGGGTGCTTTCAGGAATTTAAATGTTACAAGCATTGCTCTTCGTTATTGTTCAGCTATGTTCTGCTGAGCATTGCATTTTTCCGAACGCCAAATTTTAAGCGATACGAAGGGTTTGCATTGCAGCAAATAAGAAAAAAAAAGCAAACAAATGGTTAGTCTGATAGTTTAAGCTGTTTTTGTTGGTGATTATGCTTGTTTGTTGTTATATAGTGAATAAGAGTTTTAGTCTTATTTCATCTATCTGCATAAGGATTAATCTAGAACATATTTCACCTGTATTTTGCTGCAGTATTTACCCTGCTCACAGCTGAGTTCATTGAAACAAGATATTGCTTTTGTTGCCTGTGGTTGCAAATTGACTTTCTCAACCAAGCCTTCTAGTTTGTCAATTTTAGGGGCGCTGGACTTTTGACCAACTGGAAACTCTCTGTCTCTGAAGGGGGGGGGCGCAGTTGGCCTACAGAAGAAGAGGGTGAAATGTCTGTAGAAGTAGATCATTGTGAAGATTGTCTTGAAATACTGTTAGGATTGCGTAGATTGTGTCAGATTACTTCCTGAACAGTTCCCCCTCTTCCTCTTGCCTGTGGGCACGGGAACACTGCGTCTACCCCTGGCCAGATGACAGAACCCCCCTTGGTCAAACTGTGCCTTGTCTTCTTACTCCATTCGTCACTAG
Seq C2 exon
AACCGTGCGCGGAAAGCTCTCCGCAGGACGCTCTGGACAGGCAGAAATGCCTGGCTTCTCTGGCGTCTCTCCGCCAGGCCAAGTGGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058660:ENSDART00000081561:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.120 A=NA C2=0.194
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(19.7=100)
A:
NA
C2:
PF075289=DZF=FE(12.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGACTGAGGAGAAATACGTCA
R:
CTGGAACCACTTGGCCTGG
Band lengths:
238-1063
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]