DreEX0040889 @ danRer10
Exon Skipping
Gene
ENSDARG00000061990 | kcnh4b
Description
potassium voltage-gated channel, subfamily H (eag-related), member 4b [Source:ZFIN;Acc:ZDB-GENE-121214-54]
Coordinates
chr12:13386566-13396115:+
Coord C1 exon
chr12:13386566-13386806
Coord A exon
chr12:13395543-13395700
Coord C2 exon
chr12:13395908-13396115
Length
158 bp
Sequences
Splice sites
3' ss Seq
ATCCTACCTTTTACTTTCAGACA
3' ss Score
8.34
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
Exon sequences
Seq C1 exon
GACATGTTTGAAAAACCGTCTCTGCCTGAGTATAAAGTGGCAGCAGTTCAGAAGTCTCGATTCATCCTGCTGCACTACAGTGTGTCCAAGGCATTGTGGGACTGGATGATTCTATTGGCCACTTTCTATGTTGCTGTGACAGTGCCATACAACGTGTGTTTCACAGCGTACAGTGATGTGGAGACTGCAGGCAGGAGCACGATAGTTAGCGACATTGCCGTGGAGATGCTTTTTATTCTGG
Seq A exon
ACATCATTCTTAACTTTCGCACCACCTATGTGAGTCAATCAGGACAAGTGGTGTACGAGCCTCGCTCCATCTGTCTGCATTATGCTACCACATGGTTCTTTGTGGATCTGGTGGCTGCCCTGCCCTTTGACCTGCTCTATGCATTTAATATTACTGTT
Seq C2 exon
ACATCTCTAGTGCACCTGCTGAAAACTGTGCGATTGTTGCGTCTGTTGAGACTCCTGCAGAAGTTGGATAGATACTCACAGTACAGCGCCATGGTGCTGACGCTGCTTATGTCCATGTTTGCTCTTCTGGCTCACTGGATGGCCTGCATCTGGTACATCATTGGGCGAAAAGAGATGGAGACCAATGCAAGTGGAGCCTGGGACATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061990_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(5.7=14.8)
A:
PF0052026=Ion_trans=FE(24.8=100)
C2:
PF0052026=Ion_trans=FE(32.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTTGCTGTGACAGTGCCAT
R:
ATCCAGTGAGCCAGAAGAGCA
Band lengths:
254-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]