DreEX0043336 @ danRer10
Exon Skipping
Gene
ENSDARG00000063646 | lnpa
Description
limb and neural patterns a [Source:ZFIN;Acc:ZDB-GENE-030131-4960]
Coordinates
chr9:2031569-2035472:+
Coord C1 exon
chr9:2031569-2031609
Coord A exon
chr9:2034732-2034815
Coord C2 exon
chr9:2035421-2035472
Length
84 bp
Sequences
Splice sites
3' ss Seq
ATATTTTCACTTTATTTCAGCTT
3' ss Score
8.27
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
ATGAAAAGTTAGAAGAGCTGAAAGCAGAGAAAAAGAAAATA
Seq A exon
CTTGAACAAGTGATGGAAACGGAGACCTATAAAAATGCCAAGCTGATTCTTGAACGCTTTGACCCAGACTCAAAGAAGAAGCTT
Seq C2 exon
GAGTTAGAGACTCAACCCATTGGCCCGACTGCCACTCCAAGACAAGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063646-'7-10,'7-9,8-10
Average complexity
S
Mappability confidence:
88%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.357 A=0.071 C2=1.000
Domain overlap (PFAM):
C1:
PF083957=7tm_7=FE(9.3=100),PF074317=DUF1512=FE(18.6=100)
A:
PF083957=7tm_7=PD(14.3=71.4),PF074317=DUF1512=PD(30.0=75.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAAGTTAGAAGAGCTGAAAGC
R:
CCTTGTCTTGGAGTGGCAGTC
Band lengths:
87-171
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]