GgaEX1031918 @ galGal4
Exon Skipping
Gene
ENSGALG00000009283 | KIAA1715
Description
KIAA1715 [Source:HGNC Symbol;Acc:HGNC:21610]
Coordinates
chr7:15881166-15887657:+
Coord C1 exon
chr7:15881166-15881206
Coord A exon
chr7:15887439-15887519
Coord C2 exon
chr7:15887606-15887657
Length
81 bp
Sequences
Splice sites
3' ss Seq
GTGGAACCTTTTGTTTCCAGCTT
3' ss Score
4.6
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATGATGCGCTGGAAGATTTAAAATCTCAAAAGAAAAAAATA
Seq A exon
CTTGAGGAAGTGATGGAGAAGGAAACTTACAAGACTGCTAAACTAATTCTTGAAAGGTTTGATCCAGATTCAAATGCAAAG
Seq C2 exon
GAGGCTGAACTGCCATCTGCTGGAACATCTGCAACCTCGAGACCTGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009283-'11-13,'11-12,17-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=0.037 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATGCGCTGGAAGATTTAAAA
R:
CAGGTCTCGAGGTTGCAGATG
Band lengths:
87-168
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]