MmuEX6102217 @ mm9
Exon Skipping
Gene
ENSMUSG00000009207 | Lnp
Description
limb and neural patterns [Source:MGI Symbol;Acc:MGI:1918115]
Coordinates
chr2:74385895-74389158:-
Coord C1 exon
chr2:74389118-74389158
Coord A exon
chr2:74386032-74386115
Coord C2 exon
chr2:74385895-74385946
Length
84 bp
Sequences
Splice sites
3' ss Seq
ATGGAAATTTTTGTTTGTAGCTT
3' ss Score
4.49
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
ATGAAGCATTGGATGATTTAAAATCCCAGAAGAAAAAGATA
Seq A exon
CTTGAAGAAGTCATGGAAAAAGAAACTTATAAGACAGCTAAGTTAATTCTTGAAAGGTTTGATCCAGACTCAAAGAAAGCAAAG
Seq C2 exon
GAGTTTGAGCCGCCATCTGCTGGAGCAGCTGTAACTGCAAAGCCAGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009207-'14-16,'14-15,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.093 C2=0.978
Domain overlap (PFAM):
C1:
PF136871=DUF4153=PD(9.7=71.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCATTGGATGATTTAAAATCCCA
R:
TCCTGGCTTTGCAGTTACAGC
Band lengths:
87-171
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: