RnoEX6017445 @ rn6
Exon Skipping
Gene
ENSRNOG00000001593 | Lnpk
Description
lunapark, ER junction formation factor [Source:RGD Symbol;Acc:1312042]
Coordinates
chr3:61464029-61467170:-
Coord C1 exon
chr3:61467130-61467170
Coord A exon
chr3:61464167-61464250
Coord C2 exon
chr3:61464029-61464080
Length
84 bp
Sequences
Splice sites
3' ss Seq
ATGGAAATTTTTGTTTGTAGCTT
3' ss Score
4.49
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
ATGAAGCATTGGATGATTTAAAATCCCAGAAGAAAAAGATA
Seq A exon
CTTGAAGAAGTCATGGAAAAAGAAACTTATAAGACAGCAAAATTAATTCTTGAAAGGTTTGATCCAGACTCAAAGAAAGCAAAG
Seq C2 exon
GAGTTTGAGCCGCCATCTGCTGGAGCAGCTGCAACTGCAAAGCCAGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001593-'15-11,'15-10,16-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.214 A=0.107 C2=1.000
Domain overlap (PFAM):
C1:
PF136871=DUF4153=PD(7.9=57.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATTGGATGATTTAAAATCCCAGA
R:
CTTGTCCTGGCTTTGCAGTTG
Band lengths:
89-173
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]