GgaEX1031918 @ galGal3
Exon Skipping
Gene
ENSGALG00000009283 | KIAA1715
Description
NA
Coordinates
chr7:17492813-17499960:+
Coord C1 exon
chr7:17492813-17492853
Coord A exon
chr7:17499742-17499822
Coord C2 exon
chr7:17499909-17499960
Length
81 bp
Sequences
Splice sites
3' ss Seq
GTGGAACCTTTTGTTTCCAGCTT
3' ss Score
4.6
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATGATGCGCTGGAAGATTTAAAATCTCAAAAGAAAAAAATA
Seq A exon
CTTGAGGAAGTGATGGAGAAGGAAACTTACAAGACTGCTAAACTAATTCTTGAAAGGTTTGATCCAGATTCAAATGCAAAG
Seq C2 exon
GAGGCTGAACTGCCATCTGCTGGAACATCTGCAACCTCGAGACCTGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009283-'7-11,'7-10,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=0.037 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATGCGCTGGAAGATTTAAAA
R:
CAGGTCTCGAGGTTGCAGATG
Band lengths:
87-168
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]