MmuEX6102217 @ mm10
Exon Skipping
Gene
ENSMUSG00000009207 | Lnpk
Description
lunapark, ER junction formation factor [Source:MGI Symbol;Acc:MGI:1918115]
Coordinates
chr2:74547838-74551101:-
Coord C1 exon
chr2:74551061-74551101
Coord A exon
chr2:74547975-74548058
Coord C2 exon
chr2:74547838-74547889
Length
84 bp
Sequences
Splice sites
3' ss Seq
ATGGAAATTTTTGTTTGTAGCTT
3' ss Score
4.49
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
ATGAAGCATTGGATGATTTAAAATCCCAGAAGAAAAAGATA
Seq A exon
CTTGAAGAAGTCATGGAAAAAGAAACTTATAAGACAGCTAAGTTAATTCTTGAAAGGTTTGATCCAGACTCAAAGAAAGCAAAG
Seq C2 exon
GAGTTTGAGCCGCCATCTGCTGGAGCAGCTGTAACTGCAAAGCCAGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009207-'23-23,'23-21,25-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.204 A=0.092 C2=0.984
Domain overlap (PFAM):
C1:
PF136871=DUF4153=PD(9.7=71.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCATTGGATGATTTAAAATCCCA
R:
TCCTGGCTTTGCAGTTACAGC
Band lengths:
87-171
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types