HsaEX6016823 @ hg19
Exon Skipping
Gene
ENSG00000144320 | KIAA1715
Description
KIAA1715 [Source:HGNC Symbol;Acc:21610]
Coordinates
chr2:176829100-176835532:-
Coord C1 exon
chr2:176835492-176835532
Coord A exon
chr2:176829234-176829317
Coord C2 exon
chr2:176829100-176829151
Length
84 bp
Sequences
Splice sites
3' ss Seq
ATGGAAATTTTTGTTCGTAGCTT
3' ss Score
4.03
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATGAAGCATTGGATGATTTAAAATCCCAGAGGAAAAAAATA
Seq A exon
CTTGAAGAAGTCATGGAAAAAGAAACTTACAAGACGGCTAAATTAATTCTTGAAAGGTTTGATCCGGACTCAAAGAAAGCAAAG
Seq C2 exon
GAGTGTGAGCCGCCATCTGCTGGAGCAGCTGTAACTGCAAGACCTGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144320-'10-13,'10-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.190 A=0.265 C2=1.000
Domain overlap (PFAM):
C1:
PF083957=7tm_7=FE(9.4=100)
A:
PF083957=7tm_7=PD(14.4=71.4)
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGCATTGGATGATTTAAAATCCC
R:
CCAGGTCTTGCAGTTACAGCT
Band lengths:
87-171
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)