DreEX0044255 @ danRer10
Exon Skipping
Gene
ENSDARG00000028533 | macf1a
Description
microtubule-actin crosslinking factor 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3606]
Coordinates
chr19:35492346-35495902:-
Coord C1 exon
chr19:35495743-35495902
Coord A exon
chr19:35495015-35495341
Coord C2 exon
chr19:35492346-35492430
Length
327 bp
Sequences
Splice sites
3' ss Seq
ACTCTGGGCTACTATCCCAGGCT
3' ss Score
3.45
5' ss Seq
CTGGTATGA
5' ss Score
6.69
Exon sequences
Seq C1 exon
GCAGAAGCAGCTCGAGGAACTGCAGGTGCTGGCATTACAGTTCCATGAGGCCGTGGAGCCGCTCAGTGAGTGGCTGAGCGCAACAGAGAGACGCCTGAGCTCTGCTGAGCCAATGGGAACCCAGACATCCAAAATCACACAGCAGATTGTAAGGCACAAG
Seq A exon
GCTCTCCAAGAGGAAGTCTCCTCTCGAGAGAATAATGTAGACCGTCTTGAGAGTCTCAGCCAATCGCTCCATCCGCTCAGCTGCGCAGCCGATCAGGATTGGCTGGGCGAGCGTGTGGGTGCAGTGCGCAGCGGGCACACAGAGCTGCGTGATTGGTGCGTTCGGAGAGAGGCCATGCTGGAGCAGGCGCTGGCCAATGCACAGCTGTTTGGAGAGGAAGAGGTGGAGGTCCTGAACTGGCTAGCTGAGGTGGCCCAGAGACTGGCTGAGGTCTCAGTGCAGAGTTATCAGCCGGAGCACCTAGAGCAGCAGCACAAACACACACTG
Seq C2 exon
GCTCTTAATGAAGAGATTGTCAGCAGGAAGAAGACTGTGGACCAGGCCATTAAGAACGGACAGGCTCTGCTCAAACAAACCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028533_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.147 C2=0.034
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(5.6=11.1),PF0043516=Spectrin=PU(41.1=81.5)
A:
PF0043516=Spectrin=PD(57.0=56.0),PF0043516=Spectrin=PU(41.1=40.4)
C2:
PF0043516=Spectrin=FE(26.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGCAGCTCGAGGAACTG
R:
TGGTTTGTTTGAGCAGAGCCT
Band lengths:
241-568
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]