RnoEX0051771 @ rn6
Exon Skipping
Gene
ENSRNOG00000016047 | Macf1
Description
microtubule-actin crosslinking factor 1 [Source:RGD Symbol;Acc:1306057]
Coordinates
chr5:141085303-141087140:-
Coord C1 exon
chr5:141086981-141087140
Coord A exon
chr5:141086342-141086668
Coord C2 exon
chr5:141085303-141085387
Length
327 bp
Sequences
Splice sites
3' ss Seq
TTTTCCATCTGGATTTCCAGGCT
3' ss Score
7.09
5' ss Seq
CTGGTATTT
5' ss Score
3.5
Exon sequences
Seq C1 exon
GCAAAAGCAGCTGGAGGATATCTTGGTTCTGGCTAAACAATTCCACGAGACAGCTGAGCCTATTTCTGACTTCCTATCTGTCACAGAGAAAAAGCTTGCTAACTCGGAACCTGTTGGCACTCAAACTGCCAAAATACACCAGCAGATTATTCGTCACAAG
Seq A exon
GCTCTAGAGGAAGAAATAGAAAACCATGCAGCAGATGTGCAGCAGGCAGTTAAAATCGGGCAGTCCCTCTCCTCCCTGATATGTCCAGCAGAACAGGGCATCATGTCAGAAAAGCTAGACTCATTGCAGGCCCGATACAGTGAAATTCAAGACCGGTGCTGTCGGAAAGCATCCCTGCTTGAGCAGGCGCTGTTCAATGCTAGACTGTTCGGGGAGGATGAGGTGGAGGTGCTCAATTGGCTGGCTGAGGTTGAGGACAAGCTCAGTGCAGTGTTCGTAAAGGATTACAGACAGGATGTCCTGCAGAAACAGCATGCCGACCACCTG
Seq C2 exon
GCTTTAAATGAAGAGATTATTAATAGAAAGAAGAATGTAGATCAAGCTATTAAAAATGGTCAGGCTCTTCTAAAACAAACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016047_CASSETTE8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=0.000 C2=0.023
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(5.6=11.1),PF0043516=Spectrin=PU(41.1=81.5)
A:
PF0043516=Spectrin=PD(57.0=56.0),PF0043516=Spectrin=PU(40.6=39.4)
C2:
PF0043516=Spectrin=FE(26.4=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAAGCAGCTGGAGGATATCT
R:
AGTTTGTTTTAGAAGAGCCTGACCA
Band lengths:
241-568
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]