GgaEX0004831 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C245]
Coordinates
chr23:5376874-5378471:+
Coord C1 exon
chr23:5376874-5377033
Coord A exon
chr23:5377439-5377765
Coord C2 exon
chr23:5378387-5378471
Length
327 bp
Sequences
Splice sites
3' ss Seq
TTTGTCGCCCCGGCTTTCAGGCT
3' ss Score
7.83
5' ss Seq
CTGGTATTT
5' ss Score
3.5
Exon sequences
Seq C1 exon
GCAGAAGCAGCTGGAGGACATCCTGGTGCTGGCAAAGCAGTTCCATGAGACCACAGAGCCTGTGTCAGACTGGCTGTCTGTGACGGAGAAGAAGTTGGCCAACTCGGAGCCCATCGGCACACAGACTGCCAAGATCCAGCAGCAGATCAGCCGGCACAAG
Seq A exon
GCTCTAGAGGAGGACATTGAGGGCCACGCGGCCGACGTGGCCCACGCGGTGCGTGTCGGGCAGGCGCTGTCCGCCCTGAGCTGCGCCGCCGAGCAGCGGCTGCTGGCAGAGAAGTTGGAGTCTCTGCAGGGCCGTTACGGGGAGGTCCGCGAGCGGTGCTGCCGGAAGGCGGCTCTGCTGGAGCAGGCCCTGTGTAACGCCCGGCTCTTTGGGGAGGAGGAGGTGGAAGTGCTCAACTGGCTGGCTGAGGTCGAGGACAAGCTCGGCTCGGTATCCGTAAAGGATTACAAACGGGACGTCCTGCAGAAGCAGCATGCTGACCAGCTG
Seq C2 exon
GCTCTGAACGAGGAAATTGTGAACAGGAAGAAGAATGTGGATCAAGCCATCAGAAATGGGCAGGCTCTCCTGAAGCAAACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003693-'94-106,'94-104,96-106
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(5.6=11.1),PF0043516=Spectrin=PU(41.1=81.5)
A:
PF0043516=Spectrin=PD(57.0=56.0),PF0043516=Spectrin=PU(40.6=39.4)
C2:
PF0043516=Spectrin=FE(26.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGCAGCTGGAGGACATC
R:
TGTGGTTTGCTTCAGGAGAGC
Band lengths:
243-570
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]