DreEX0048545 @ danRer10
Exon Skipping
Gene
ENSDARG00000074143 | myo10l3
Description
myosin X-like 3 [Source:ZFIN;Acc:ZDB-GENE-070912-237]
Coordinates
chr9:12786440-12807777:-
Coord C1 exon
chr9:12807679-12807777
Coord A exon
chr9:12788962-12789120
Coord C2 exon
chr9:12786440-12786627
Length
159 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTATGTGTTAAAGGTG
3' ss Score
7.6
5' ss Seq
TATGTGAGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
GGAGCTCGTGTGTGGGTTCGGGACAAGGAGCAGCTCTTGCCATCCACCGTCAGCTGCTGTGATGACCGGACCCTCATCCTGACCACCGACTATGGAGAG
Seq A exon
GTGATGACTCTGGATCAGGCTGAGGTGAACCGGCTGAAGGTTTTCCCCATGCATTCCACCAGCATCAGTGGAGTGGAGGACATGTCCACTCTGGCTGAGCTTCACGAGGCCGCCATCATGCACAACCTCTACCTGCGCTACCAGAAAGACCTCATTTAT
Seq C2 exon
ACTAACATTGGCTCGATCCTGGCAGCCATGAATCCTTATAAGCAGATAGCAGGCCTGTATGACAGCGAGGCGGTGGATGTGTACAGCAGACATCATCTGGGTGAACTTCCTCCACACATCTTCGCCGTGGCCAACGAGTGTTACCGCTGCCTGTGGAAGAGACACGACAGTCAGTGTGTGCTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074143-'2-4,'2-3,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0006316=Myosin_head=PU(4.2=52.8)
C2:
PF0006316=Myosin_head=FE(9.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTGCCATCCACCGTCAG
R:
ATGAGCACACACTGACTGTCG
Band lengths:
251-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]