MmuEX0030423 @ mm10
Exon Skipping
Gene
ENSMUSG00000022272 | Myo10
Description
myosin X [Source:MGI Symbol;Acc:MGI:107716]
Coordinates
chr15:25666426-25714216:+
Coord C1 exon
chr15:25666426-25666524
Coord A exon
chr15:25701562-25701720
Coord C2 exon
chr15:25714029-25714216
Length
159 bp
Sequences
Splice sites
3' ss Seq
TCATTCATTTGTGCCTGCAGGTG
3' ss Score
11.26
5' ss Seq
TATGTGAGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
GGAGCACGGGTCTGGCTAAGAGAAAATGGCCAGCATTTTCCGAGTACTGTAAATTCCTGTGCAGAAGGCGTCGTGGTCTTCCAGACAGACTATGGGCAG
Seq A exon
GTGTTCACCTACAAGCAGAGTACAATCACCAACCAGAAGGTGACAGCTATGCACCCCCTGCACGAGGAGGGCGTGGACGACATGGCTTCCCTGGCCGAGCTCCATGGGGGCTCCATCATGTACAACCTTTTCCAGCGCTACAAAAGGAACCAAATCTAT
Seq C2 exon
ACCTACATCGGCTCCATCATCGCGTCAGTGAACCCCTACCAGCCCATCGCTGGCCTGTACGAGCGCGCCACCATGGAGGAGTACAGCAGGTGCCACCTGGGCGAGCTTCCACCGCACATCTTCGCCATTGCCAACGAATGCTATCGCTGCTTGTGGAAGCGCCATGACAACCAATGTGTCCTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022272_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0006316=Myosin_head=PU(4.2=52.8)
C2:
PF0006316=Myosin_head=FE(11.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCAGCATTTTCCGAGTAC
R:
CATTGGTTGTCATGGCGCTTC
Band lengths:
249-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types