HsaEX0041019 @ hg19
Exon Skipping
Gene
ENSG00000145555 | MYO10
Description
myosin X [Source:HGNC Symbol;Acc:7593]
Coordinates
chr5:16794755-16877816:-
Coord C1 exon
chr5:16877718-16877816
Coord A exon
chr5:16818118-16818276
Coord C2 exon
chr5:16794755-16794942
Length
159 bp
Sequences
Splice sites
3' ss Seq
AATTCCTCTCCCTCCCTCAGGTA
3' ss Score
11.01
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
GGAACACGGGTCTGGCTGAGAGAAAATGGCCAGCATTTTCCAAGTACTGTAAATTCCTGTGCAGAAGGCATCGTCGTCTTCCGGACAGACTATGGTCAG
Seq A exon
GTATTCACTTACAAGCAGAGCACAATTACCCACCAGAAGGTGACTGCTATGCACCCCACGAACGAGGAGGGCGTGGATGACATGGCGTCCTTGACAGAGCTCCATGGCGGCTCCATCATGTATAACTTATTCCAGCGGTATAAGAGAAATCAAATATAT
Seq C2 exon
ACCTACATCGGCTCCATCCTGGCCTCCGTGAACCCCTACCAGCCCATCGCCGGGCTGTACGAGCCTGCCACCATGGAGCAGTACAGCCGGCGCCACCTGGGCGAGCTGCCCCCGCACATCTTCGCCATCGCCAACGAGTGCTACCGCTGCCTGTGGAAGCGCCACGACAACCAGTGCATCCTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145555_CASSETTE6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.240 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0006316=Myosin_head=PU(15.3=52.8)
C2:
PF0006316=Myosin_head=FE(33.9=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCAGCATTTTCCAAGTACT
R:
ATGAGGATGCACTGGTTGTCG
Band lengths:
258-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)