BtaEX0023486 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020126 | MYO10
Description
Bos taurus myosin X (MYO10), mRNA. [Source:RefSeq mRNA;Acc:NM_174394]
Coordinates
chr20:56351569-56431348:+
Coord C1 exon
chr20:56351569-56351667
Coord A exon
chr20:56411659-56411817
Coord C2 exon
chr20:56431161-56431348
Length
159 bp
Sequences
Splice sites
3' ss Seq
AATTCATTCCCCCTCATCAGGTA
3' ss Score
7.53
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
GGAACACGGGTCTGGCTGAGAGAAAACGGCCAGCATTTCCCCAGTACCGTAAACTCCTGCGCGGAGGGCGTTGTGGTGTTCCAGACGGACTATGGTCAG
Seq A exon
GTATTCACGTACAAGCAGAGCACAATTACACACCAGAAGGTGATGCCTATGCAGCCCACGGATGAGGAGGGCGTGGATGACATGGCCACCCTGACAGAGCTCCACGGGGGTGCCATCATGCACAACTTGTACCAGCGCTACAAGAGAAACCAAATCTAT
Seq C2 exon
ACCTACATCGGCTCCATCATTGCCTCCGTGAACCCCTACAAGACCATCGCGGGCCTGTACTCGAGGGACGCCGTGGATCGCTACAGCAGGTGCCACCTGGGTGAGCTGCCCCCCCACGTCTTCGCCATCGCCAACGAGTGCTACCGCTGCCTGTGGAAGCGCCACGACAACCAGTGCGTGCTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020126_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.283 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0006316=Myosin_head=PU(4.2=52.8)
C2:
PF0006316=Myosin_head=FE(9.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTACCGTAAACTCCTGCG
R:
CTGATGAGCACGCACTGGTT
Band lengths:
247-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development