GgaEX0019591 @ galGal3
Exon Skipping
Gene
ENSGALG00000012954 | MYO10
Description
NA
Coordinates
chr2:77249405-77265630:+
Coord C1 exon
chr2:77249405-77249566
Coord A exon
chr2:77255942-77256056
Coord C2 exon
chr2:77265443-77265630
Length
115 bp
Sequences
Splice sites
3' ss Seq
CTTTGATGTGCTCCCTGCAGAAA
3' ss Score
9.81
5' ss Seq
CTAGTAAGC
5' ss Score
5.2
Exon sequences
Seq C1 exon
CAGGTATTCACCTATAAACAGAGCACCATCACTCACCAAAAAGTAACACCTATGCATCAGACAAGTGTGGAGAGCGTGGAAGACATGGCAACGCTAGTAGATCTCCATGAAGGCTCTATTATGCATAACTTATTCCAACGATATCAGCAAGATAAAATCTAT
Seq A exon
AAAATGGACCTTAAACAAAAGTGTATCAAGGACCTATACGCCATCCTGGACAGCTGAACAACTCTGTAGCATGGGCCATTGACTAAGGAAGAAAAGTTGCCATTTAAGCCACCTA
Seq C2 exon
ACATACATTGGTTCCATAGTGGCCTCTGTGAACCCTTACAAGACCATCCCGGGCCTGTATGACTGTGCTGCCATGGAGCGATACAGCAAGCACCACATGGGAGAGATTGCACCTCACATCTTCGCCGTGGCGAATGAGTGCTACCGCTGCCTCTGGAAGCGTCATGACAACCAGTGTATCCTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012954-'1-3,'1-2,2-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(75.7=51.9)
A:
PF0006316=Myosin_head=PD(18.9=36.8)
C2:
PF0006316=Myosin_head=FE(10.5=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGCACCATCACTCACCA
R:
GGTGCAATCTCTCCCATGTGG
Band lengths:
258-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]