RnoEX0057145 @ rn6
Exon Skipping
Gene
ENSRNOG00000010161 | Myo10
Description
myosin X [Source:RGD Symbol;Acc:1307193]
Coordinates
chr2:77926165-77976306:+
Coord C1 exon
chr2:77926165-77926263
Coord A exon
chr2:77962626-77962784
Coord C2 exon
chr2:77976119-77976306
Length
159 bp
Sequences
Splice sites
3' ss Seq
TCACTCATTTGTGCCCACAGGTG
3' ss Score
11.75
5' ss Seq
TATGTGAGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
GGAGCACGGGTCTGGCTCAGAGAAAATGGCCAGCATTTTCCAAGTACTGTAAATTCCTGTGCAGAAGGCGTCGTGGTCTTCCAGACAGACTATGGGCAG
Seq A exon
GTGTTCACCTATAAGCAGAGTACAATCACAAACCAGAAGGTGACAGCTATGCACCCCCTGCATGAGGAAGGTGTTGACGACATGGCTTCCCTGACCGAGCTCCACGGAGGCTCCATCATGTACAACCTATTCCAGCGCTACAAGAGGAATCAAATCTAT
Seq C2 exon
ACCTACATCGGCTCCATCATCGCATCAGTGAACCCCTACCAGCCCATCGCTGGCCTGTACGAGCGCGCTACCATGGAGCAGTACAGCAGGTGCCACCTGGGCGAGCTTCCACCGCACATCTTCGCCATAGCCAATGAGTGCTATCGCTGCCTGTGGAAGCGCCATGACAACCAGTGTGTGCTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010161-'4-7,'4-6,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0006316=Myosin_head=PU(4.2=52.8)
C2:
PF0006316=Myosin_head=FE(11.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAGAGAAAATGGCCAGCA
R:
GCTTCCACAGGCAGCGATAG
Band lengths:
245-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]