GgaEX0019591 @ galGal4
Exon Skipping
Gene
ENSGALG00000012954 | MYO10
Description
myosin X [Source:HGNC Symbol;Acc:HGNC:7593]
Coordinates
chr2:75511779-75560587:+
Coord C1 exon
chr2:75511779-75511877
Coord A exon
chr2:75544608-75544766
Coord C2 exon
chr2:75560400-75560587
Length
159 bp
Sequences
Splice sites
3' ss Seq
TATTTTTTTAACTCTTTCAGGTA
3' ss Score
10.52
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
GGGTCTCGAGTCTGGTTGCGAGAAAATAATCAGCATTATCCAAGTACTGTTCATTCCTGTGCGGAAGGAGTCATCGTGTTCAGGACAGACTATGGCCAG
Seq A exon
GTATTCACCTATAAACAGAGCACCATCACTCACCAAAAAGTAACACCTATGCATCAGACAAGTGTGGAGAGCGTGGAAGACATGGCAACGCTAGTAGATCTCCATGAAGGCTCTATTATGCATAACTTATTCCAACGATATCAGCAAGATAAAATCTAT
Seq C2 exon
ACATACATTGGTTCCATAGTGGCCTCTGTGAACCCTTACAAGACCATCCCGGGCCTGTATGACTGTGCTGCCATGGAGCGATACAGCAAGCACCACATGGGAGAGATTGCACCTCACATCTTCGCCGTGGCGAATGAGTGCTACCGCTGCCTCTGGAAGCGTCATGACAACCAGTGTATCCTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012954-'5-10,'5-6,13-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.119 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0006316=Myosin_head=PU(80.0=52.8)
C2:
PF0006316=Myosin_head=FE(66.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCGAGTCTGGTTGCGAGAA
R:
CGGTAGCACTCATTCGCCAC
Band lengths:
242-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]