HsaEX0041019 @ hg38
Exon Skipping
Gene
ENSG00000145555 | MYO10
Description
myosin X [Source:HGNC Symbol;Acc:HGNC:7593]
Coordinates
chr5:16794646-16877707:-
Coord C1 exon
chr5:16877609-16877707
Coord A exon
chr5:16818009-16818167
Coord C2 exon
chr5:16794646-16794833
Length
159 bp
Sequences
Splice sites
3' ss Seq
AATTCCTCTCCCTCCCTCAGGTA
3' ss Score
11.01
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
GGAACACGGGTCTGGCTGAGAGAAAATGGCCAGCATTTTCCAAGTACTGTAAATTCCTGTGCAGAAGGCATCGTCGTCTTCCGGACAGACTATGGTCAG
Seq A exon
GTATTCACTTACAAGCAGAGCACAATTACCCACCAGAAGGTGACTGCTATGCACCCCACGAACGAGGAGGGCGTGGATGACATGGCGTCCTTGACAGAGCTCCATGGCGGCTCCATCATGTATAACTTATTCCAGCGGTATAAGAGAAATCAAATATAT
Seq C2 exon
ACCTACATCGGCTCCATCCTGGCCTCCGTGAACCCCTACCAGCCCATCGCCGGGCTGTACGAGCCTGCCACCATGGAGCAGTACAGCCGGCGCCACCTGGGCGAGCTGCCCCCGCACATCTTCGCCATCGCCAACGAGTGCTACCGCTGCCTGTGGAAGCGCCACGACAACCAGTGCATCCTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145555-'21-31,'21-26,41-31
Average complexity
C1
Mappability confidence:
71%=65=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.236 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0006316=Myosin_head=PU(15.5=52.8)
C2:
PF0006316=Myosin_head=FE(18.7=100)
Main Skipping Isoform:
ENST00000274203fB20521
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCAGCATTTTCCAAGTACT
R:
ATGAGGATGCACTGGTTGTCG
Band lengths:
258-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development