DreEX0048524 @ danRer10
Exon Skipping
Gene
ENSDARG00000017004 | myo10
Description
myosin X [Source:ZFIN;Acc:ZDB-GENE-070912-277]
Coordinates
chr2:42811166-42826333:-
Coord C1 exon
chr2:42826235-42826333
Coord A exon
chr2:42823613-42823771
Coord C2 exon
chr2:42811166-42811353
Length
159 bp
Sequences
Splice sites
3' ss Seq
ATATTGTGTGTTTTGCTTAGGTG
3' ss Score
8.6
5' ss Seq
TATGTGAGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
GGTTGTCGTGTGTGGCTCTGGGTGGAGGATCATTATGTCCCCAGTACGGTGGACTCGTGCTCGGGCGGAGTGGTGGTCTTTAACACAGACTACGGTCAG
Seq A exon
GTGTACACCTACAAACAGAACGCCGTGAGCAGACAGAGGGTTTACCCAATGCACAGCAGCAGCATCACCAGCGTGGAGGACATGGCAGCCCTACAGGATCTGCATGACGGGGCCATTCTTCACAATCTGCACCTCCGCTACACACAGAAGGCCATATAT
Seq C2 exon
ACGTACATCGGCTCTATTTTAGTAGCAGTAAACCCGTATGAGAGTCTGTCAGGGCTGTATGACGGCGCGGCTGTAGAGCGATACAGCCGACATCACCTGGGCGAAATCCCTCCTCACATCTACGCCATAGCGAACGAGTGCTACAGATCCCTGTGGAAGCGCTCTAACAACCAGTGTGTGCTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017004-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.018 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0006316=Myosin_head=PU(4.2=52.8)
C2:
PF0006316=Myosin_head=FE(9.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCTGGGTGGAGGATCATT
R:
GGTTGTTAGAGCGCTTCCACA
Band lengths:
258-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]