DreEX0051892 @ danRer10
Exon Skipping
Gene
ENSDARG00000105112 | ntn1a
Description
netrin 1a [Source:ZFIN;Acc:ZDB-GENE-990415-169]
Coordinates
chr6:23357670-23455336:-
Coord C1 exon
chr6:23453943-23455336
Coord A exon
chr6:23374848-23375036
Coord C2 exon
chr6:23357670-23357819
Length
189 bp
Sequences
Splice sites
3' ss Seq
TCTCTTATCTTTTTTCGCAGCCT
3' ss Score
9.37
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
TTTCCAGTACTACTCGACCCAGTGTAGAAAGATGTACAACAAGCCCAGCAAAGCCACGATTACTAAGCAGAACGAGCAAGAGGCCATCTGCACAGATTCTCACACCGACATGCATCCTCTCTCCGGCGGGCTGATCGCGTTCAGCACCCTGGACGGGCGACCCTCCGCGCACGACTTTGACAATTCACCCGTACTTCAGGACTGGGTGACCGCCACTGACATTAAGGTGACTTTCAGCCGCCTGCACACTTTCGGAGACGAAAACGAGGATGACTCGGAGCTGGCCAGAGATTCCTATTTTTACGCAGTTTCCGACCTGCAGGTTGGAGGCAGATGTAAGTGTAATGGACACGCATCACGGTGCGTCAAAGACCGGGATGGAAACCTAGTGTGCGAGTGCAAGCACAACACAGCCGGACCAGAGTGTGACAGATGCAAACCTTTTCACTATGACCGACCCTGGCAGCGCGCAACCGCCAGAGAAGCCAACGAATGTGTCG
Seq A exon
CCTGCAATTGTAACCTTCATGCGAGGCGCTGTCGTTTCAACATGGAGCTTTACAAACTCTCTGGAAGGAAAAGTGGAGGAGTCTGTCTGAACTGCCGCCACAATACAGCTGGTCGCCACTGCCACTACTGCAAAGAGGGCTACTATAGAGACATGTCCAAGCCCATCTCCCACAGAAAGGCCTGCAAAG
Seq C2 exon
CCTGTGATTGCCATCCTGTGGGGGCCGCGGGCAAAACCTGTAACCAAACCACAGGCCAATGCCCCTGTAAAGACGGTGTGACGGGTATCACATGCAACCGTTGTGCTAACGGCTACCAGCAGAGCCGATCACCCATTGCCCCCTGCATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000105112-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=0.028 C2=0.000
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=WD(100=68.7),PF0005319=Laminin_EGF=WD(100=15.9)
A:
PF0005319=Laminin_EGF=WD(100=95.3)
C2:
PF0005319=Laminin_EGF=WD(100=94.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCTGGCCAGAGATTCCTA
R:
CCACAGGATGGCAATCACAGG
Band lengths:
245-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]