RnoEX0061330 @ rn6
Exon Skipping
Gene
ENSRNOG00000003947 | Ntn1
Description
netrin 1 [Source:RGD Symbol;Acc:619809]
Coordinates
chr10:54810334-54967585:-
Coord C1 exon
chr10:54966654-54967585
Coord A exon
chr10:54825414-54825602
Coord C2 exon
chr10:54810334-54810483
Length
189 bp
Sequences
Splice sites
3' ss Seq
CTGCTCTGTTCCCCCCGCAGCCT
3' ss Score
11.37
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
CTTCCAATTCTATTCCACTCAGTGCCGCAAAATGTACAACCGGCCGCACCGCGCGCCCATCACTAAGCAGAACGAGCAGGAGGCGGTGTGCACCGACTCGCACACCGACATGCGCCCGCTCTCCGGCGGGCTGATCGCTTTCAGCACGCTGGACGGGCGGCCCTCGGCGCACGACTTCGACAACTCGCCGGTGCTGCAGGACTGGGTCACCGCCACAGACATCCGCGTGGCTTTCAGCCGCCTGCACACGTTTGGCGACGAGAACGAAGATGACTCGGAGCTGGCTCGCGACTCCTATTACTATGCAGTATCTGACCTGCAGGTTGGCGGCCGCTGCAAGTGCAATGGCCACGCGGCGCGTTGCGTGCGCGACCGAGACGACAGTCTGGTGTGTGACTGTAGGCACAACACGGCCGGCCCTGAATGCGACCGTTGCAAGCCCTTCCACTACGATCGGCCCTGGCAGCGCGCCACGGCTCGCGAGGCCAACGAGTGCGTGG
Seq A exon
CCTGCAACTGCAACCTTCATGCTCGGCGCTGCAGATTCAACATGGAGCTTTACAAGCTATCAGGGCGCAAGAGCGGGGGTGTCTGTCTCAACTGCCGCCACAACACTGCCGGCCGCCACTGCCACTACTGCAAGGAGGGCTTCTACCGAGACATGGGCAAGCCTATCACCCACCGGAAGGCTTGCAAAG
Seq C2 exon
CCTGTGATTGCCACCCTGTGGGTGCTGCTGGTAAGACCTGCAATCAAACCACCGGCCAGTGTCCCTGCAAGGACGGCGTGACAGGCATCACCTGCAACCGCTGTGCCAAAGGCTACCAGCAGAGCCGCTCCCCCATCGCCCCTTGCATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003947-'2-5,'2-3,9-5
Average complexity
S
Mappability confidence:
86%=78=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=WD(100=74.9),PF0005319=Laminin_EGF=WD(100=17.4)
A:
PF0005319=Laminin_EGF=WD(100=95.3)
C2:
PF0005319=Laminin_EGF=WD(100=94.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGTGTGTGACTGTAGGCA
R:
GGCTCTGCTGGTAGCCTTTG
Band lengths:
242-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]