HsaEX6020928 @ hg19
Exon Skipping
Gene
ENSG00000065320 | NTN1
Description
netrin 1 [Source:HGNC Symbol;Acc:8029]
Coordinates
chr17:8925628-9083273:+
Coord C1 exon
chr17:8925628-8926708
Coord A exon
chr17:9066130-9066318
Coord C2 exon
chr17:9083124-9083273
Length
189 bp
Sequences
Splice sites
3' ss Seq
CTCTCTGTCTCCCCCTGCAGCCT
3' ss Score
12.56
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
CTTCCAGTTCTACTCCACGCAGTGCCGCAAGATGTACAACCGGCCGCACCGCGCGCCCATCACCAAGCAGAACGAGCAGGAGGCCGTGTGCACCGACTCGCACACCGACATGCGCCCGCTCTCGGGCGGCCTCATCGCCTTCAGCACGCTGGACGGGCGGCCCTCGGCGCACGACTTCGACAACTCGCCCGTGCTGCAGGACTGGGTCACGGCCACAGACATCCGCGTGGCCTTCAGCCGCCTGCACACGTTCGGCGACGAGAACGAGGACGACTCGGAGCTGGCGCGCGACTCGTACTTCTACGCGGTGTCCGACCTGCAGGTGGGCGGCCGGTGCAAGTGCAACGGCCACGCGGCCCGCTGCGTGCGCGACCGCGACGACAGCCTGGTGTGCGACTGCAGGCACAACACGGCCGGCCCGGAGTGCGACCGCTGCAAGCCCTTCCACTACGACCGGCCCTGGCAGCGCGCCACAGCCCGCGAAGCCAACGAGTGCGTGG
Seq A exon
CCTGTAACTGCAACCTGCATGCCCGGCGCTGCCGCTTCAACATGGAGCTCTACAAGCTTTCGGGGCGCAAGAGCGGAGGTGTCTGCCTCAACTGTCGCCACAACACCGCCGGCCGCCACTGCCATTACTGCAAGGAGGGCTACTACCGCGACATGGGCAAGCCCATCACCCACCGGAAGGCCTGCAAAG
Seq C2 exon
CCTGTGATTGCCACCCTGTGGGTGCTGCTGGCAAAACCTGCAACCAAACCACCGGCCAGTGTCCCTGCAAGGACGGCGTGACGGGTATCACCTGCAACCGCTGCGCCAAAGGCTACCAGCAGAGCCGCTCTCCCATCGCCCCCTGCATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000065320-'2-3,'2-1,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=WD(100=68.5),PF0005319=Laminin_EGF=WD(100=15.9)
A:
PF0005319=Laminin_EGF=WD(100=95.3)
C2:
PF0005319=Laminin_EGF=WD(100=94.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGCCTGGTGTGCGAC
R:
GCTCTGCTGGTAGCCTTTGG
Band lengths:
246-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)