MmuEX6086361 @ mm9

Exon Skipping

Gene

ENSMUSG00000020902 | Ntn1

Description

netrin 1 [Source:MGI Symbol;Acc:MGI:105088]

Coordinates

chr11:68073999-68199686:-

Coord C1 exon

chr11:68198605-68199686

Coord A exon

chr11:68090925-68091113

Coord C2 exon

chr11:68073999-68074148

Length

189 bp

Sequences

Splice sites

3' ss Seq

TTCTCTCTGTTCCCCTGCAGCCT

3' ss Score

11.19

5' ss Seq

AAGGTAGGT

5' ss Score

10.29

Exon sequences

Seq C1 exon

CTTCCAGTTCTATTCCACGCAGTGCCGCAAAATGTACAACCGGCCGCACCGCGCGCCTATCACCAAACAGAACGAGCAGGAGGCCGTGTGCACCGACTCGCACACCGACATGCGCCCGCTCTCTGGCGGGCTGATCGCTTTCAGCACGCTGGACGGGCGGCCCTCGGCGCACGACTTCGACAACTCGCCGGTGCTGCAGGACTGGGTCACGGCCACCGACATCCGCGTGGCTTTCAGCCGCCTGCACACGTTCGGCGACGAGAACGAAGACGACTCGGAGCTGGCGCGCGACTCCTATTACTATGCAGTGTCTGACCTGCAGGTTGGCGGCCGCTGCAAGTGCAACGGCCACGCGGCGCGTTGCGTGCGCGACCGAGACGACAGTCTGGTGTGTGACTGTAGGCACAACACGGCCGGCCCTGAATGCGACCGTTGCAAGCCCTTCCACTACGACCGGCCCTGGCAGCGCGCCACGGCCCGCGAGGCCAACGAGTGCGTGG

Seq A exon

CCTGCAACTGCAACCTCCATGCTCGGCGCTGCAGATTCAACATGGAGCTCTATAAGCTATCAGGGCGCAAGAGCGGGGGAGTCTGTCTCAACTGCCGCCACAACACTGCGGGCCGCCACTGCCACTACTGCAAGGAGGGCTTCTACCGAGACATGGGCAAGCCTATCACCCACCGGAAGGCTTGCAAAG

Seq C2 exon

CCTGTGATTGCCACCCAGTGGGTGCTGCTGGCAAGACCTGCAATCAAACCACTGGCCAATGTCCCTGCAAGGACGGCGTGACGGGCATCACCTGCAACCGATGTGCCAAAGGCTACCAGCAGAGCCGCTCCCCCATCGCCCCTTGCATCA

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000020902-'5-6,'5-5,6-6=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features