BtaEX6087088 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012137 | NTN1
Description
netrin 1 [Source:HGNC Symbol;Acc:HGNC:8029]
Coordinates
chr19:29084419-29216631:+
Coord C1 exon
chr19:29084419-29085433
Coord A exon
chr19:29203917-29204105
Coord C2 exon
chr19:29216482-29216631
Length
189 bp
Sequences
Splice sites
3' ss Seq
GGAGTCCCTGCCTCTCACAGCCT
3' ss Score
5.32
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
CTTTCAGTTCTACTCCACGCAGTGCCGCAAGATGTACAACCGGCCGCACCGCGCGCCCATCACCAAACAGAACGAGCAGGAGGCCGTGTGCACCGACTCGCACACCGACATGCGCCCACTCTCGGGCGGCCTCATCGCCTTCAGCACGCTGGACGGGCGACCCTCGGCGCACGACTTCGACAACTCGCCGGTGCTGCAGGACTGGGTTACGGCCACCGACATCCGCGTGGCTTTCAGCCGCCTGCACACGTTCGGCGACGAGAACGAGGACGACTCGGAGCTGGCGCGCGACTCGTACTTCTACGCCGTGTCCGACCTGCAGGTGGGCGGCCGCTGCAAGTGCAACGGCCACGCGGCCCGCTGCGTGCGCGACCGCGACGACAGCCTGGTGTGCGACTGCAGGCACAACACGGCCGGCCCGGAGTGTGACCGCTGCAAGCCCTTCCACTACGACCGGCCCTGGCAGCGCGCCACCGCCCGCGAGGCCAACGAGTGCGTGG
Seq A exon
CCTGTAACTGCAACCTGCATGCCCGGCGGTGCCGTTTCAACATGGAGCTTTACAAGCTGTCGGGGCGCAAGAGTGGGGGCGTCTGCCTTAACTGTCGCCACAACACGGCCGGCCGTCACTGCCACTACTGCAAGGAGGGCTACTACCGCGACCTGGGCAAGCCCATCACCCACCGCAAGGCCTGCAAAG
Seq C2 exon
CCTGCGATTGCCACCCCGTGGGCGCTGCTGGCAAGACCTGCAACCAGACCACAGGCCAGTGTCCCTGCAAGGACGGCGTGACCGGCATCACCTGCAACCGCTGCGCCAAGGGCTACCAGCAGAGCCGCTCGCCCATCGCCCCCTGCATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012137-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=WD(100=68.7),PF0005319=Laminin_EGF=WD(100=15.9)
A:
PF0005319=Laminin_EGF=WD(100=95.3)
C2:
PF0005319=Laminin_EGF=WD(100=94.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTTCTACGCCGTGTCCGAC
R:
GTGGTCTGGTTGCAGGTCTTG
Band lengths:
257-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]