MmuEX6086361 @ mm10
Exon Skipping
Gene
ENSMUSG00000020902 | Ntn1
Description
netrin 1 [Source:MGI Symbol;Acc:MGI:105088]
Coordinates
chr11:68260497-68386184:-
Coord C1 exon
chr11:68385103-68386184
Coord A exon
chr11:68277423-68277611
Coord C2 exon
chr11:68260497-68260646
Length
189 bp
Sequences
Splice sites
3' ss Seq
TTCTCTCTGTTCCCCTGCAGCCT
3' ss Score
11.19
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
CTTCCAGTTCTATTCCACGCAGTGCCGCAAAATGTACAACCGGCCGCACCGCGCGCCTATCACCAAACAGAACGAGCAGGAGGCCGTGTGCACCGACTCGCACACCGACATGCGCCCGCTCTCTGGCGGGCTGATCGCTTTCAGCACGCTGGACGGGCGGCCCTCGGCGCACGACTTCGACAACTCGCCGGTGCTGCAGGACTGGGTCACGGCCACCGACATCCGCGTGGCTTTCAGCCGCCTGCACACGTTCGGCGACGAGAACGAAGACGACTCGGAGCTGGCGCGCGACTCCTATTACTATGCAGTGTCTGACCTGCAGGTTGGCGGCCGCTGCAAGTGCAACGGCCACGCGGCGCGTTGCGTGCGCGACCGAGACGACAGTCTGGTGTGTGACTGTAGGCACAACACGGCCGGCCCTGAATGCGACCGTTGCAAGCCCTTCCACTACGACCGGCCCTGGCAGCGCGCCACGGCCCGCGAGGCCAACGAGTGCGTGG
Seq A exon
CCTGCAACTGCAACCTCCATGCTCGGCGCTGCAGATTCAACATGGAGCTCTATAAGCTATCAGGGCGCAAGAGCGGGGGAGTCTGTCTCAACTGCCGCCACAACACTGCGGGCCGCCACTGCCACTACTGCAAGGAGGGCTTCTACCGAGACATGGGCAAGCCTATCACCCACCGGAAGGCTTGCAAAG
Seq C2 exon
CCTGTGATTGCCACCCAGTGGGTGCTGCTGGCAAGACCTGCAATCAAACCACTGGCCAATGTCCCTGCAAGGACGGCGTGACGGGCATCACCTGCAACCGATGTGCCAAAGGCTACCAGCAGAGCCGCTCCCCCATCGCCCCTTGCATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020902-'8-10,'8-8,11-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=WD(100=68.5),PF0005319=Laminin_EGF=WD(100=15.9)
A:
PF0005319=Laminin_EGF=WD(100=95.3)
C2:
PF0005319=Laminin_EGF=WD(100=94.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGTGTGTGACTGTAGGCA
R:
GGCTCTGCTGGTAGCCTTTG
Band lengths:
242-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types