GgaEX7009430 @ galGal4
Exon Skipping
Gene
ENSGALG00000023626 | NTN1
Description
Netrin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q90922]
Coordinates
chr18:2020996-2061321:+
Coord C1 exon
chr18:2020996-2022070
Coord A exon
chr18:2055035-2055223
Coord C2 exon
chr18:2061172-2061321
Length
189 bp
Sequences
Splice sites
3' ss Seq
GATGCTCTGTGCCCCCGCAGCCT
3' ss Score
9.24
5' ss Seq
AAGGTACCT
5' ss Score
8.49
Exon sequences
Seq C1 exon
CTTCCAGTTCTACTCCACGCAGTGCCGCAAGATGTACAACAAGCCGAGCCGCGCCGCCATCACCAAGCAGAACGAGCAGGAGGCCATCTGCACCGACTCGCACACCGACGTGCGGCCCCTCTCCGGCGGCCTCATCGCCTTCAGCACCCTGGACGGCCGCCCCACCGCCCACGACTTCGACAACTCGCCCGTGCTGCAGGACTGGGTGACGGCCACCGACATCAAGGTGACCTTCAGCCGCCTGCACACCTTCGGCGACGAGAACGAGGACGACTCCGAGCTCGCCCGCGACTCCTACTTCTACGCCGTGTCCGACCTGCAGGTCGGCGGGCGCTGCAAGTGCAACGGGCACGCGTCCCGCTGCGTCCGCGACCGCGACGACAACCTGGTGTGCGACTGCAAGCACAACACGGCCGGGCCCGAGTGCGACCGCTGCAAACCCTTCCACTACGACCGGCCCTGGCAGAGGGCGACCGCCCGAGAGGCCAACGAGTGCGTGG
Seq A exon
CCTGCAACTGCAACCTGCATGCACGGCGCTGCCGCTTCAACATGGAGCTGTACAAGCTGTCGGGCAGAAAGAGCGGCGGTGTCTGCCTCAACTGCCGGCACAACACGGCCGGGCGGCACTGCCACTACTGCAAGGAGGGCTTCTACCGCGACCTCAGCAAACCCATCTCCCACCGCAAGGCCTGCAAAG
Seq C2 exon
AGTGCGATTGCCATCCCGTGGGCGCCGCCGGCCAAACCTGCAACCAAACCACGGGGCAGTGTCCATGCAAGGACGGCGTCACCGGCATCACCTGCAACCGCTGTGCCAAGGGCTACCAGCAGAGCCGCTCGCCCATCGCGCCCTGCATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023626-'0-2,'0-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.044 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=WD(100=68.1),PF0005319=Laminin_EGF=WD(100=15.8)
A:
PF0005319=Laminin_EGF=WD(100=95.3)
C2:
PF0005319=Laminin_EGF=WD(100=94.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTACTTCTACGCCGTGTCCGA
R:
GTGGTTTGGTTGCAGGTTTGG
Band lengths:
258-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]