DreEX0052478 @ danRer10
Exon Skipping
Gene
ENSDARG00000028900 | odf2a
Description
outer dense fiber of sperm tails 2a [Source:ZFIN;Acc:ZDB-GENE-091117-46]
Coordinates
chr21:13040043-13040626:+
Coord C1 exon
chr21:13040043-13040114
Coord A exon
chr21:13040186-13040302
Coord C2 exon
chr21:13040441-13040626
Length
117 bp
Sequences
Splice sites
3' ss Seq
ATTGTTACTCAATGCAACAGGAA
3' ss Score
4.13
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
CGTATTCTTGTAAAGCTTCAAGACAAAGAAAGAGAGGTCAACCAGCTCACTTCCATATTAGAGAGTGAAAAG
Seq A exon
GAAAGCTCAAAAACCACCAGCGAACTGTCCAAAGTCTTAGAGTCCACCCGTGCACATCTACAGGGTCAACTGCGAAATAAAGAAGCAGAGAATAACCGCCTTAACGTTCAGATCAGG
Seq C2 exon
AATCTGGAGCGATCCCTCAGCCAGCAGCAGGGGGAGATGGACCACCTGCAGAACCAGCTGCGAGACCTCAGGCAGCAGGCGGAGGCTGATAAGGAGGCCCTAAAGAAAGCCACGCGGGCACAGAAACTGCGGGCACAGCGCAGTGAAGACACTGTCGGACAGCTCAGTGGCCAGCTCTTAGAGATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028900-'12-15,'12-12,13-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=1.000 C2=0.839
Domain overlap (PFAM):
C1:
NO
A:
PF115593=ADIP=PU(28.3=66.7)
C2:
PF115593=ADIP=FE(66.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTCAAGACAAAGAAAGAGAGGT
R:
TCTCTAAGAGCTGGCCACTGA
Band lengths:
243-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]