BtaEX6046422 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000030567 | ODF2
Description
outer dense fiber of sperm tails 2 [Source:HGNC Symbol;Acc:HGNC:8114]
Coordinates
chr11:99063381-99064507:+
Coord C1 exon
chr11:99063381-99063452
Coord A exon
chr11:99063586-99063702
Coord C2 exon
chr11:99064322-99064507
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTTTCTCCGTCTCTCCAAAGGCT
3' ss Score
10.85
5' ss Seq
AAGGTACCT
5' ss Score
8.49
Exon sequences
Seq C1 exon
CGCCTGCTATTACTGCTGCAAGACAAAGACAAGGAGGTGGAAGATCTCCTCCAGGAAATACAATGTGAGAAG
Seq A exon
GCTCAAGCAAAGACAGCATCTGAGCTTTCCAAGTCCATGGAGACCATGCGGGGGCATTTGCAAGCACAGCTTCGGTGCAAAGAGGCAGAGAACAGTCGCCTGTGTATGCAGATCAAG
Seq C2 exon
AACCTGGAGCGCAGCGGGAACCAGCACAAGGCGGAAGTGGAGGCCATCATGGAGCAGCTGAAGGAACTGAAGCAGAAGGGAGAACGAGACAAAGAGTCCTTGAAGAAAGCCATCCGAGCCCAAAAAGAGAGAGCCGAGAAGAGCGAGGAGTATGCTGAGCAGCTGCACGTGCAACTTGCCGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030567-'22-21,'22-20,23-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.487 C2=0.516
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTGCTATTACTGCTGCAA
R:
GCACGTGCAGCTGCTCAG
Band lengths:
244-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]