HsaEX6063246 @ hg38
Exon Skipping
Gene
ENSG00000136811 | ODF2
Description
outer dense fiber of sperm tails 2 [Source:HGNC Symbol;Acc:HGNC:8114]
Coordinates
chr9:128482816-128484886:+
Coord C1 exon
chr9:128482816-128482887
Coord A exon
chr9:128483938-128484054
Coord C2 exon
chr9:128484701-128484886
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTTTTTCCGTCTCTCCACAGGCT
3' ss Score
13.77
5' ss Seq
AAGGTACCT
5' ss Score
8.49
Exon sequences
Seq C1 exon
CGCCTGCTGTTACTGCTGCAAGACAAGGACAAGGAGGTGGAAGAGCTCCTTCAGGAAATACAATGTGAGAAG
Seq A exon
GCTCAAGCAAAGACAGCCTCTGAGCTTTCTAAATCCATGGAGTCCATGCGTGGGCATTTGCAGGCACAGCTTCGGTCCAAAGAGGCTGAGAACAGTCGCCTGTGCATGCAGATTAAG
Seq C2 exon
AATCTGGAGCGCAGCGGGAATCAGCATAAGGCAGAAGTGGAGGCCATCATGGAGCAGCTGAAGGAGTTGAAGCAGAAGGGAGACCGAGACAAAGAGAGCTTGAAGAAGGCCATCCGAGCCCAGAAGGAGCGAGCCGAGAAGAGCGAGGAGTATGCTGAGCAGCTACACGTGCAACTCGCTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136811-'42-39,'42-38,43-39
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.647 C2=0.656
Domain overlap (PFAM):
C1:
PF123253=TMF_TATA_bd=PU(1.9=8.3)
A:
PF123253=TMF_TATA_bd=FE(36.9=100)
C2:
PF123253=TMF_TATA_bd=PD(58.3=96.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCTGTTACTGCTGCAAGA
R:
GAGTTGCACGTGTAGCTGCTC
Band lengths:
247-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains