GgaEX1041150 @ galGal3
Exon Skipping
Gene
ENSGALG00000004767 | ODF2
Description
NA
Coordinates
chr17:5745151-5746960:+
Coord C1 exon
chr17:5745151-5745222
Coord A exon
chr17:5745824-5745940
Coord C2 exon
chr17:5746805-5746960
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTTGTTTGCATTTGATTTAGGAA
3' ss Score
8.68
5' ss Seq
CGGGTATGT
5' ss Score
8.79
Exon sequences
Seq C1 exon
CAACTTCAGATGAGGCTTCAGGATAAAGAAAAAGAGATCAACAATCTTGCTGTTCAGATACAGGAAGAAAAG
Seq A exon
GAACAGGCAAGGACAGCGAGTGAGCTCTCAAAATCCTTGGAATCTGTGAGAGGCCATCTACAAGCACAGCTACGACATAAGGAAGCTGAGAACAACCGTCTGACGACGCAGATCCGG
Seq C2 exon
AATCTGGAGCGCAGTGAAGCTCAGCATAAGGCAGAGGTGGAATGTATCAAGGACCAACTGAAAGAACTGAGGCAGAAGGCAGACCGTGATAAAGATGCCCTGAAGAGAGCCCTCCGTGCACAGAAGGAGCGGGCAAAGCGGAGTGAGGAGTGTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004767-'17-15,'17-13,18-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.708 A=1.000 C2=0.635
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTTCAGATGAGGCTTCAGGA
R:
CACACTCCTCACTCCGCTTTG
Band lengths:
226-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]