Special

MmuEX0032960 @ mm9

Exon Skipping

Gene
ENSMUSG00000026790 | Odf2
Description
outer dense fiber of sperm tails 2 [Source:MGI Symbol;Acc:MGI:1098824]
Coordinates
chr2:29769751-29770439:+
Coord C1 exon
chr2:29769751-29769822
Coord A exon
chr2:29769914-29770030
Coord C2 exon
chr2:29770254-29770439
Length
117 bp
Sequences
Splice sites
3' ss Seq
CACTTTCTCTGTCTCCCAAGGCT
3' ss Score
8.24
5' ss Seq
AAGGTGCTT
5' ss Score
4.72
Exon sequences
Seq C1 exon
CGCCTGCTGTTACTACTGCAAGACAAGGACAAGGAGGTGGAAGAACTCCTCCAGGAGATACAATGTGAAAAG
Seq A exon
GCTCAAGCAAAGACAGCGTCTGAGCTTTCCAAGTCCATGGAGTCCATGCGGGGGCATTTGCAGGCACAGCTTCGCTGCAAAGAGGCTGAGAACAGTCGCCTGTGCATGCAGATCAAG
Seq C2 exon
AACTTAGAGCGCAGTGGGAACCAGCATAAGGCGGAAGTAGAGGCCATCATGGAGCAGCTAAAGGAACTGAAGCAGAAGGGAGACCGAGACAAAGAGACCCTAAAGAAGGCCATCCGAGCCCAGAAAGAGCGAGCCGAGAAGAGTGAGGAGTATGCCGAGCAGCTGCATGTGCAACTGGCCGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026790_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.487 C2=0.551
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NO

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000109394





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000028128, ENSMUSP00000049272, ENSMUSP00000109384, ENSMUSP00000109385, ENSMUSP00000109386, ENSMUSP00000109387, ENSMUSP00000109388, ENSMUSP00000109388f6171A, ENSMUSP00000109391, ENSMUSP00000109392, ENSMUSP00000109393, ENSMUSP00000109395, ENSMUSP00000109396
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr9:128483938-128484054 
HIGH PSI
HsaEX6063246
(ODF2)
Human
(hg19)
chr9:131246217-131246333 
HIGH PSI
HsaEX6063246
(ODF2)
Rat
(rn6)
chr3:8475981-8476097 
RnoEX0062082
(Odf2)
Cow
(bosTau6)
chr11:99063586-99063702 
HIGH PSI
BtaEX6046422
(ODF2)
Chicken
(galGal4)
chr17:5120070-5120180 
HIGH PSI
GgaEX1041150
(ODF2)
Chicken
(galGal3)
chr17:5745824-5745940 
HIGH PSI
GgaEX1041150
(ODF2)
Zebrafish
(danRer10)
chr21:13040186-13040302 
HIGH PSI
DreEX0052478
(odf2a)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TGCAAGACAAGGACAAGGAGG

				
R: 
CTTGTCGGCCAGTTGCACAT

				
Band lengths: 
242-359

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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