RnoEX0062082 @ rn6
Exon Skipping
Gene
ENSRNOG00000014584 | Odf2
Description
outer dense fiber of sperm tails 2 [Source:RGD Symbol;Acc:3229]
Coordinates
chr3:8475824-8476519:+
Coord C1 exon
chr3:8475824-8475895
Coord A exon
chr3:8475988-8476097
Coord C2 exon
chr3:8476334-8476519
Length
110 bp
Sequences
Splice sites
3' ss Seq
TCTGTCTCCCAAGGCTCAAGCAA
3' ss Score
-5.69
5' ss Seq
AAGGTGCTG
5' ss Score
4.05
Exon sequences
Seq C1 exon
CGCCTGCTGTTACTACTGCAAGACAAGGACAAGGAAGTGGAAGAACTCCTCCAGGAGATACAATGTGAGAAG
Seq A exon
CAAAGACAGCGTCTGAGCTCTCCAAGTCCATGGAGTCCATGCGGGGGCATTTGCAGGCACAGCTTCGCTGCAAAGAGGCTGAGAACAGCCGCCTGTGCATGCAGATCAAG
Seq C2 exon
AATTTAGAGCGCAGTGGGAACCAGCACAAGGCGGAAGTAGAGGCCATCATGGAGCAGCTAAAGGAACTGAAGCAAAAGGGAGACCGAGACAAAGAGACCCTGAAGAAGGCCATCCGAGCCCAGAAGGAGCGAGCTGAGAAGAGTGAGGAGTATGCCGAGCAGCTACATGTGCAGCTGGCCGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014584-'40-33,'40-32,41-33
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.471 C2=0.504
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTGCTGTTACTACTGC
R:
ACATGTAGCTGCTCGGCATAC
Band lengths:
242-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]